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17 search results found

Slicer ⭐ 1,339

Multi-platform, free open source software for visualization and image computing.

Deep Learning Toolkit for Medical Image Analysis

Slicergitsvnarchive ⭐ 883

Multi-platform, free open source software for visualization and image computing.

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

Brainchop ⭐ 208

Brainchop: In-browser 3D MRI rendering and segmentation

Clinicadl ⭐ 146

Framework for the reproducible processing of neuroimaging data with deep learning methods

Nobrainer ⭐ 139

A framework for developing neural network models for 3D image processing.

Livianet ⭐ 133

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

Visualqc ⭐ 68

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Nifti Image Converter ⭐ 64

🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users

Extensionsindex ⭐ 52

Slicer extensions index

Nifti Rs ⭐ 32

Rust implementation of the NIfTI-1 format

Assemblynet ⭐ 31

AssemblyNet: 3D Whole Brain MRI segmentation pipeline

Hippmapp3r ⭐ 27

AICONSlab's hippocampal segmentation algorithm using CNNs

Awesome Medical Imaging ⭐ 26

Awesome list of software that I use to do research in medical imaging.

Icvmapp3r ⭐ 12

AICONSlab's brain extraction (skull-stripping) algorithm using CNNs

Hypermapp3r ⭐ 11

AICONSlab's white matter hyperintensities (WMH) segmentation algorithm using CNNs

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