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medical-imaging x

287 search results found

Slicer ⭐ 1,339

Multi-platform, free open source software for visualization and image computing.

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

Deep Learning Toolkit for Medical Image Analysis

Medicaldetectiontoolkit ⭐ 1,249

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

Fastmri ⭐ 1,197

A large-scale dataset of both raw MRI measurements and clinical MRI images.

Niftynet ⭐ 1,170

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

Pyradiomics ⭐ 1,060

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

Medmnist ⭐ 903

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

Medicalzoopytorch ⭐ 896

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

Slicergitsvnarchive ⭐ 883

Multi-platform, free open source software for visualization and image computing.

Medsegdiff ⭐ 831

Medical Image Segmentation with Diffusion Model

A set of common support code for medical imaging, surgical navigation, and related purposes.

Medicaltorch ⭐ 724

A medical imaging framework for Pytorch

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

All About The Gan ⭐ 602

All About the GANs(Generative Adversarial Networks) - Summarized lists for GAN

Lungmask ⭐ 576

Automated lung segmentation in CT

Kaggle_ndsb2017 ⭐ 568

Kaggle datascience bowl 2017

Innereye Deeplearning ⭐ 509

Medical Imaging Deep Learning library to train and deploy 3D segmentation models on Azure Machine Learning

Monailabel ⭐ 496

MONAI Label is an intelligent open source image labeling and learning tool.

Medical Transformer ⭐ 484

Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021

Robot Surgery Segmentation ⭐ 475

Wining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge

Nndetection ⭐ 468

nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

A framework for high-performance medical image processing, neural network inference and visualization

Unext Pytorch ⭐ 359

Official Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network", MICCAI 2022

U Net Brain Tumor ⭐ 351

U-Net Brain Tumor Segmentation

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

Grassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm

Neurite ⭐ 317

Neural networks toolbox focused on medical image analysis

Xvision ⭐ 294

Chest Xray image analysis using Deep learning !

Pyimsegm ⭐ 289

Image segmentation - general superpixel segmentation & center detection & region growing

Handmovementtracking ⭐ 247

A simple hand movement tracking module for humans ✍️

Kiu Net Pytorch ⭐ 245

Official Pytorch Code of KiU-Net for Image/3D Segmentation - MICCAI 2020 (Oral), IEEE TMI

Visvis - the object oriented approach to visualization

2020 Cbms Doubleu Net ⭐ 207

DoubleU-Net for Semantic Image Segmentation in TensorFlow & Pytorch (Nominated for Best Paper Award (IEEE CBMS))

Deep learning framework for MRI reconstruction

Chexnet With Localization ⭐ 181

Weakly Supervised Learning for Findings Detection in Medical Images

Rl Medical ⭐ 171

Deep Reinforcement Learning (DRL) agents applied to medical images

Staintools ⭐ 166

Tools for tissue image stain normalisation and augmentation in Python 3

Mednext ⭐ 161

MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation (MICCAI 2023).

Bccd_dataset ⭐ 160

BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.

Open Solution Data Science Bowl 2018 ⭐ 158

Open solution to the Data Science Bowl 2018

Grand Challenge.org ⭐ 156

A platform for end-to-end development of machine learning solutions in biomedical imaging

Covidprognosis ⭐ 151

COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations

Cbim Medical Image Segmentation ⭐ 148

A PyTorch framework for medical image segmentation

Clinicadl ⭐ 146

Framework for the reproducible processing of neuroimaging data with deep learning methods

Nobrainer ⭐ 139

A framework for developing neural network models for 3D image processing.

Kaapana ⭐ 135

Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.

Rt Utils ⭐ 135

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

Syndiff ⭐ 134

Official PyTorch implementation of SynDiff described in the paper (https://arxiv.org/abs/2207.08208).

Livianet ⭐ 133

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

SegAN: Semantic Segmentation with Adversarial Learning

A generalizable application framework for segmentation, regression, and classification using PyTorch

"pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.

Iciar2018 ⭐ 124

Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)

Fuse Med Ml ⭐ 121

A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)

Neurdicom ⭐ 112

RESTful PACS server with plugins

Resunetplusplus With Crf And Tta ⭐ 106

Official implementation of ResUNet++, CRF, and TTA for segmentation of medical images (IEEE JBIHI)

Torchstain ⭐ 100

Stain normalization tools for histological analysis and computational pathology

Segment Anything Medical Evaluation ⭐ 95

Code for "Segment Anything Model for Medical Image Analysis: an Experimental Study" in Medical Image Analysis

Mirtorch ⭐ 90

A PyTorch-powered differentiable image reconstruction/optimization toolbox

medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis

Monai Deploy ⭐ 87

MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.

Image-and-Spatial Transformer Networks

Open source Python library for building bioimage analysis pipelines

Domain Adaptation and Generalization for Medical Image Analysis

Medtagger ⭐ 82

A collaborative framework for annotating medical datasets using crowdsourcing.

Prostate MR Image Segmentation 2012

Processing Library and Analysis Toolkit for Medical Imaging in Python

Medical Image Segmentation Toolkit based on PaddlePaddle - 基于paddle的医学影像分割框架

Auto-differentiable digitally reconstructed radiographs in PyTorch

Monai Deploy App Sdk ⭐ 74

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

Odil is a C++11 library for the DICOM standard

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

Projectweek ⭐ 71

Website for NA-MIC Project Weeks

Dicom_rt_and_images_to_mask ⭐ 70

Various utilities created to help with the interpretation of DICOM images and DICOM RT Structures to NumPy masks and Simple-ITK handles/Nifti images. Some necessary steps for deep learning

Official Implementation of ResViT: Residual Vision Transformers for Multi-modal Medical Image Synthesis

Visualqc ⭐ 68

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Vnet Tensorflow ⭐ 66

Tensorflow implementation of the V-Net architecture for medical imaging segmentation.

Open Kbp ⭐ 66

Develop dose prediction models for knowledge-based planning in radiotherapy

Pytomography ⭐ 65

This repository enables easy and fast medical image reconstruction in Python.

Nifti Image Converter ⭐ 64

🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users

BIRL: Benchmark on Image Registration methods with Landmark validations

Modelhub ⭐ 61

A collection of deep learning models with a unified API.

Angiodysplasia Segmentation ⭐ 61

Wining solution and its further development for MICCAI 2017 Endoscopic Vision Challenge Angiodysplasia Detection and Localization

Kaggle Rsna ⭐ 61

Deep Learning for Automatic Pneumonia Detection, RSNA challenge

A flexible ML framework built to simplify medical image reconstruction and analysis experimentation.

Segmentation_metrics ⭐ 58

A package to compute medical segmentation metrics.

Cnn Dicom Segmentation ⭐ 57

DICOM Image Segmentation with CNNs in Tensorflow

Slicerlungctanalyzer ⭐ 57

This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.

Pydicom Seg ⭐ 54

Python package for DICOM-SEG medical segmentation file reading and writing

ADN: Artifact Disentanglement Network for Unsupervised Metal Artifact Reduction

Brats Toolkit ⭐ 53

Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.

Diff Unet ⭐ 52

Diff-UNet: A Diffusion Embedded Network for Volumetric Segmentation. (using diffusion for 3D medical image segmentation)

Extensionsindex ⭐ 52

Slicer extensions index

Open_brats2020 ⭐ 51

Top 10 brats 2020 Solution

[MICCAI'21] [Tensorflow] Retinal Vessel Segmentation using a Novel Multi-scale Generative Adversarial Network

Gpt2 Chest X Ray Report Generation ⭐ 50

This is the implementation of the CDGPT2 model mentioned in our paper 'Automated Radiology Report Generation using Conditioned Transformers'

Histogan ⭐ 50

Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.

Itksphinxexamples ⭐ 50

Cookbook examples for the Insight Toolkit documented with Sphinx

Rivuletpy ⭐ 50

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

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