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8 search results found

Caiman Matlab ⭐ 236

Complete Matlab pipeline for large scale calcium imaging data analysis

Normcorre ⭐ 132

Matlab routines for online non-rigid motion correction of calcium imaging data

CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).

Flow_registration ⭐ 17

Flow-Registration toolbox for 2P motion compensation

Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)

HNCcorr algorithm for neuron identification in calcium imaging datasets.

Graft Analysis ⭐ 10

This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Time-trace (GraFT) Dictionary Learning, is published in Charles et al. 2022 in the IEEE Transactions of Image Processing.

Finderspiker ⭐ 7

Signal Processing Toolbox for Calcium Imaging Data

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