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Search results for calcium imaging
calcium-imaging
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21 search results found
Caiman
⭐
571
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Caiman Matlab
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236
Complete Matlab pipeline for large scale calcium imaging data analysis
Normcorre
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132
Matlab routines for online non-rigid motion correction of calcium imaging data
Cascade
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87
Calibrated inference of spiking from calcium ΔF/F data using deep networks
Ciatah
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77
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
Mesmerize
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57
Platform for Calcium Imaging analysis. DEPRECATED.
Support
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46
Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
Mesmerize Core
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43
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
Neuroglia
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30
a Python machine learning library for neurophysiology data
Optinist
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28
calcium imaging pipeline tool
Imaging_tools
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22
A table containing imaging analysis tools for biology, with a focus on calcium imaging.
Flow_registration
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17
Flow-Registration toolbox for 2P motion compensation
Deep Calcium
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16
Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
Sid
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14
Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)
Hnccorr
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13
HNCcorr algorithm for neuron identification in calcium imaging datasets.
Samuroi
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11
SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
Bonsai.miniscope
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11
Bonsai package for controlling headborne, calcium imaging miniscopes
Graft Analysis
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10
This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Time-trace (GraFT) Dictionary Learning, is published in Charles et al. 2022 in the IEEE Transactions of Image Processing.
Bear
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8
Official code for BEAR. "Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data", MICCAI 2021.
Pvsnp
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7
a Python toolbox for reproducible analysis and visualization of NeuroPhysiological data.
Finderspiker
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7
Signal Processing Toolbox for Calcium Imaging Data
Related Searches
Python Calcium Imaging (19)
Neuroscience Calcium Imaging (14)
Jupyter Notebook Calcium Imaging (12)
Matlab Calcium Imaging (10)
Spike Calcium Imaging (7)
Deep Learning Calcium Imaging (6)
Calcium Imaging Motion Correction (5)
Neurons Calcium Imaging (5)
Segmentation Calcium Imaging (4)
Calcium Imaging Source Extraction (3)
1-21 of 21 search results
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