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Search results for indels

20 search results found

Structural variant and indel caller for mapped sequencing data

Structural variation and indel detection by local assembly

Strelka ⭐ 204

Strelka2 germline and somatic small variant caller

Microassembly based somatic variant caller for NGS data

Sigminer ⭐ 119

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

Bayestyper ⭐ 52

A method for variant graph genotyping based on exact alignment of k-mers

Generic human DNA variant annotation pipeline

Platinumgenomes ⭐ 42

The Platinum Genomes Truthset

ClairS - a deep-learning method for long-read somatic small variant calling

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

Gssplayground ⭐ 21

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

Homoplasyfinder ⭐ 12

A tool to identify and annotate homoplasies on a phylogeny and sequence alignment

Indelpost ⭐ 11

Python library for simple and complex indels.

Metagwastoolkit ⭐ 10

A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies

Bioinformatics ⭐ 10

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.

Dockstore Cgpwgs ⭐ 9

Dockstore implementation of CGP core WGS analysis

Crispr_dart ⭐ 7

A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data

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