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5 search results found

Structural variant and indel caller for mapped sequencing data

Strelka ⭐ 204

Strelka2 germline and somatic small variant caller

Sigminer ⭐ 119

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/

ClairS - a deep-learning method for long-read somatic small variant calling

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

Gssplayground ⭐ 21

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

Indelpost ⭐ 11

Python library for simple and complex indels.

Bioinformatics ⭐ 10

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.

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