Project Name	Stars	Most Recent Commit	Open Issues	License	Language
Serratus	219	a year ago	36	gpl-3.0	Jupyter Notebook
Ultra-deep search for novel viruses
Gatk4 Data Processing	99	2 years ago	6	bsd-3-clause	wdl
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
Gatk4 Exome Analysis Pipeline	37	3 years ago		bsd-3-clause	wdl
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
Indigo	29	6 months ago		gpl-3.0	JavaScript
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Gnomad Sv Pipeline	22	4 years ago	4	mit	R
Code and custom scripts relevant to gnomAD-SV (Collins, Brand, et al., 2020)
Transgener	6	a year ago			C++
Transgene integration and rearrangement discovery using NGS

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Serratus ⭐ 219

Ultra-deep search for novel viruses

most recent commit a year ago

Gatk4 Data Processing ⭐ 99

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

most recent commit 2 years ago

Gatk4 Exome Analysis Pipeline ⭐ 37

This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.

most recent commit 3 years ago

Indigo ⭐ 29

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

most recent commit 6 months ago

Gnomad Sv Pipeline ⭐ 22

Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)

most recent commit 4 years ago

Transgener ⭐ 6

Transgene integration and rearrangement discovery using NGS

most recent commit a year ago

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Indigo vs Serratus

Indigo vs Gatk4 Data Processing

Indigo vs Gatk4 Exome Analysis Pipeline

Indigo vs Gnomad Sv Pipeline

Indigo vs Transgener

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