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Search results for genome synteny
genome
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synteny
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10 search results found
Jcvi
⭐
650
Python library to facilitate genome assembly, annotation, and comparative genomics
Quota Alignment
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44
Guided synteny alignment between duplicated genomes (within specified quota constraint)
Gcv
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32
Federating genomes with love (and synteny derived from functional annotations)
Gssplayground
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21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
Mcscan
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17
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
Symap
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17
Synteny Mapping and Analysis Program
Csbfinder
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15
A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes
Pyscaf
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12
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
Accusyn
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9
AccuSyn: An Accurate Web-based Genome Synteny Browser
Synder
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7
Trace intervals between genomes using a synteny map
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