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Search results for genome kraken

13 search results found

Krakenuniq ⭐ 201

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

Nullarbor ⭐ 80

💾 📃 "Reads to report" for public health and clinical microbiology

Flextaxd ⭐ 54

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

Kraken_db_install_scripts ⭐ 36

Updated Kraken DB install scripts to cope with new-ish NCBI structure

Metameta ⭐ 18

A pipeline for bioinformatics analysis of bacterial genomes

Kraken Trawl ⭐ 7

A tool to help create custom `kraken` databases

acdc - (a)utomated (c)ontamination (d)etection and (c)onfidence estimation for single-cell genome data

K2Mem is a variant of Kraken 2 taxonomic sequence classification system that can learn from the previous classifications.

2019_classifiers_benchmark ⭐ 5

Benchmarking of metagenomic classifiers

Kraken Linked ⭐ 5

Kodoja: identifying viruses from plant RNA sequencing data

Sunbeam_databases ⭐ 5

lock down databases for sunbeam pipeline use

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1-13 of 13 search results

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