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Search results for genome comparative genomics

comparative-genomics x

18 search results found

Python library to facilitate genome assembly, annotation, and comparative genomics

Ideogram ⭐ 265

Chromosome visualization for the web

Funannotate ⭐ 261

Eukaryotic Genome Annotation Pipeline

Ppanggolin ⭐ 191

Build a partitioned pangenome graph from microbial genomes

Sibeliaz ⭐ 113

A fast whole-genome aligner based on de Bruijn graphs

Orthologr ⭐ 68

Genome wide orthology inference and dNdS estimation

Quota Alignment ⭐ 44

Guided synteny alignment between duplicated genomes (within specified quota constraint)

Federating genomes with love (and synteny derived from functional annotations)

Pan-genomic sequence analysis

Segalign ⭐ 26

A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC4140

Comparative_genomics ⭐ 24

Micro 612 genomics workshop

Gssplayground ⭐ 21

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

A toolkit for prokaryotic comparative genomics

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

Workflow for identifying and classifying homologous gene/protein sequences

Positive Selection ⭐ 10

Scripts and procedures for detecting positively selected genes and codons in primates

AccuSyn: An Accurate Web-based Genome Synteny Browser

Fishcomparativeatlas ⭐ 6

FishComparativeAtlas is a pipeline to trace the evolution of sister duplicated chromosomes derived from whole genome duplication in teleost genomes.

Teaching Comp Genomics Vis ⭐ 6

Comparative Genomics and Visualisation teaching module

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