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Search results for dna fasta
dna
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fasta
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46 search results found
Poly
⭐
620
A Go package for engineering organisms.
Pyfaidx
⭐
427
Efficient pythonic random access to fasta subsequences
Htsjdk
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271
A Java API for high-throughput sequencing data (HTS) formats.
Pyfastx
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211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Seqviz
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191
a JavaScript DNA, RNA, and protein sequence viewer
Aligngraph
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165
Algorithm for secondary de novo genome assembly guided by closely related references
Genomics
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154
A collection of scripts and notes related to genomics and bioinformatics
Pydna
⭐
140
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
Branch
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122
Boosting RNA-Seq assemblies with partial or related genomic sequences
Chiron
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114
A basecaller for Oxford Nanopore Technologies' sequencers
Fasta36
⭐
95
Git repository for FASTA36 sequence comparison software
Cljam
⭐
87
A DNA Sequence Alignment/Map (SAM) library for Clojure
Cobs
⭐
58
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
Any2fasta
⭐
54
Convert various sequence formats to FASTA
Gccontent Benchmark
⭐
49
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
Sequence_manipulation_suite
⭐
45
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
Fluentdna
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43
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Antonie
⭐
36
Antonie is an integrated, robust, reliable and fast processor of DNA reads
Kseqpp
⭐
34
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
Naf
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32
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
Radia
⭐
27
RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection
Taxondna
⭐
26
Taxonomy-aware DNA sequence processing toolkit
Orfipy
⭐
25
Fast and flexible ORF finder
Flu Prediction
⭐
18
Predicting Future Influenza Virus Sequences with Machine Learning
Freqgen
⭐
16
🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
Dna2proteins
⭐
15
A Python script to translate DNA sequences to protein sequences
Scriptmanager
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14
Dna Sequence Machine Learning
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12
Understand DNA structure and how machine learning can be used to work with DNA sequence data.
Sequencing_for_genetics
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11
유전학자를 위한 시퀀싱 자료 분석
Seqshuffle.jl
⭐
9
Shuffle the string sequences such that the k-mer frequency is preserved in each string
Ipdmhc
⭐
8
Github for files currently published in the IPD-MHC FTP Directory hosted at the European Bioinformatics Institute
Genetics
⭐
8
A boost library for genetic searches
Blss
⭐
8
A suite of unique bioinformatics tools for the brave explorer.
Sequencetools
⭐
7
Set of scripts etc. to work with DNA sequence and related files
Addtag Project
⭐
6
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
Covidgenotyper
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6
Visualization toolkit for SARS-CoV-2 whole genome sequencing data
Callmom
⭐
6
Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.
Sdm
⭐
6
Fast tool for sequence related tasks
Aminosee
⭐
5
AminoSeeNoEvil (or just AminoSee) is a DNA visualisation that assigns a unique colour hue to each amino acid and start/stop codon in the sequence, and then projects it into 2D and 3D space using an infinite mathematics space-filling function called the "Hilbert curve". This is done to preserve sequence proximity such that 90% of the DNA that is close to its neighbour - such as genes - are also closeby in the image at different resolutions. Genomics researchers can convert any file containing ASC
Cl Fasta To Notes
⭐
5
Common lisp tool for DNA data sonification
Ddv
⭐
5
DNA Data Visualization Software
Jellyfish
⭐
5
Fork of the jellyfish kmer counter. Here is the description copied from their site: JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting th
Flash
⭐
5
Pufferfish
⭐
5
Super simple, super lightweight dna compression tool
Satminer
⭐
5
satMiner: A Toolkit to NGS satellite DNA mining and analysis
Molbiox
⭐
5
Utilities and protocols for bioinformatics
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Bioinformatics Dna (191)
1-46 of 46 search results
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