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46 search results found

Pyfastx ⭐ 211

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

Serval Dna ⭐ 168

The Serval Project's core daemon that implements Distributed Numbering Architecture (DNA), MDP, VoMP, Rhizome, MeshMS, etc.

Program for aligning DNA sequences, a pairwise aligner.

Primer3 ⭐ 125

Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).

Git repository for FASTA36 sequence comparison software

A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence

Starcode ⭐ 65

All pairs search and sequence clustering

That missing frog DNA you've been looking for

Model and predict short DNA sequence features with neural networks

Exomedepth ⭐ 46

ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.

Variantkey ⭐ 34

Numerical Encoding for Human Genetic Variants

Modimizer ⭐ 33

a toolset for fast DNA read set matching and assembly using a new type of reduced kmer

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

Hpg Aligner ⭐ 32

HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment

Machineboss ⭐ 31

Bioinformatics Open Source Sequence machine

Ai_components ⭐ 31

AI parts on Healthcare and Genetic Data

Banded Striped DNA Sequence Alignment

Igenomics ⭐ 26

The first app for Mobile DNA Sequence Alignment and Analysis

Vgp Tools ⭐ 26

Commotiond ⭐ 25

The system management daemon for the Commotion Wireless Project.

♥ Essential Functions for DNA Manipulation

yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp to 32kb.

DNA/RNA pattern matching algorithm

Method for dating admixture in ancient DNA specimens

Seqrequester ⭐ 17

A tool for summarizing, extracting, generating and modifying DNA sequences.

Symmetric DUST for finding low-complexity regions in DNA sequences

Shifted Hamming Distance ⭐ 17

Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal paper (2015) by Xin et al. at http://users.ece.cmu.edu/~omutlu/pub/shifted-hammi

Pimd Dense ⭐ 16

Continuation of the original pimd-dense from 1998-1999, gaps filled with frog DNA from pimd

Mapping Iterative Assembler ⭐ 15

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

Methhaplo ⭐ 12

allele specific DNA methylation haplotype region

An efficient DNA sequence compressor using Neural Networks

Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences

Popscomp ⭐ 11

Solvent Accessible Surface Areas of Biomolecules and their Complexes

EXPERIMENTAL implementation of side graph

Smith-Waterman Acceleration on Intel’s FPGA with OpenCL for Long DNA Sequences

Pair-End AssembeR

DNA read mapper will map short reads to the entire genome using all of your cores -- and GPU too

A tool to find and visualize rearrangements in DNA sequences

Matchclips2 ⭐ 9

paired end distance, split reads matching, read depth are used to detect and precisely locate structure variations

A toolkit for DNA sequence analysis

Sierra Sql ⭐ 6

Anything and everything that is related to III's ILS Sierra DNA SQL queries

DNA multiple sequence aligner, official version from Penn State's Miller Lab

Tracetuner ⭐ 5

TraceTuner, the DNA sequencing quality value, base calling and trace processing software.

Evilaustralians ⭐ 5

Violent platforming game

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