Mapping Iterative Assembler
Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Nanopolish | 496 | 8 months ago | 60 | mit | C++ | |||||
| Signal-level algorithms for MinION data | ||||||||||
| Miniasm | 195 | 4 years ago | 52 | mit | TeX | |||||
| Ultrafast de novo assembly for long noisy reads (though having no consensus step) | ||||||||||
| Gencore | 103 | 6 months ago | 38 | mit | C++ | |||||
| Generate duplex/single consensus reads to reduce sequencing noises and remove duplications | ||||||||||
| Mantis | 50 | 4 months ago | 7 | mit | Python | |||||
| A package to annotate protein sequences | ||||||||||
| Ococo | 39 | 5 years ago | 9 | mit | C++ | |||||
| Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream. | ||||||||||
| Spark Tutorial | 34 | 8 years ago | apache-2.0 | Scala | ||||||
| Introduction to predictive modeling in Spark with applications in pharmaceutical bioinformatics | ||||||||||
| Hapo G | 18 | 5 months ago | 3 | other | C | |||||
| Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads. | ||||||||||
| Mapping Iterative Assembler | 15 | 11 years ago | artistic-2.0 | C | ||||||
| Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria | ||||||||||
| Sc2 Illumina Pipeline | 14 | 3 years ago | 11 | agpl-3.0 | Nextflow | |||||
| Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub | ||||||||||
| Connet | 10 | a year ago | 4 | Python | ||||||
| CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning | ||||||||||
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Bioinformatics
Assembler
Genomics
Consensus
Dna