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bioinformatics
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virus
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18 search results found
Serratus
⭐
219
Ultra-deep search for novel viruses
V Pipe
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119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Fastv
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56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Virtool
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41
Viral infection diagnostics using next-generation sequencing
Iva
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37
de novo virus assembler of Illumina paired reads
Uniquekmer
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33
Generate unique KMERs for every contig in a FASTA file
Prophyle
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30
Accurate, resource-frugal and deterministic DNA sequence classifier.
Virtus
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28
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Vapid
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27
VAPiD: Viral Annotation and Identification Pipeline
Vigen
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24
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
Pathogentrack
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22
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
Adapt
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16
A package for designing activity-informed nucleic acid diagnostics for viruses.
Micall
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14
Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
Recan
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9
genetic distance plotting for recombination events analysis
Gluetools
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9
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
Esviritu
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7
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
Dima
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5
A command-line tool that analyses the diversity and motifs of protein/nucleotide sequences.
Viretap
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5
A 03-713 Bioinformatics Practicum project. It focuses on virus transcriptome detection of a given diseased model (i.e. human cancer) using RNA-seq data, and in the future, some further analyses including SNP analysis etc.
Freeform Virus Blinky
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5
Freeform electronics sculpture of a SARS-CoV-2 virus that blinks it's own RNA sequence.
Decontaminer
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5
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS da
Nf Ncov Voc
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5
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
Sars2seq
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5
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
Reneo
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5
🦠🧬 Unraveling Viral Genomes from Metagenomes
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1-18 of 18 search results
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