Viretap
A 03-713 Bioinformatics Practicum project. It focuses on virus transcriptome detection of a given diseased model (i.e. human cancer) using RNA-seq data, and in the future, some further analyses including SNP analysis etc.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Serratus | 219 | a year ago | 36 | gpl-3.0 | Jupyter Notebook | |||||
| Ultra-deep search for novel viruses | ||||||||||
| V Pipe | 119 | 4 months ago | 27 | apache-2.0 | Jupyter Notebook | |||||
| V-pipe is a pipeline designed for analysing NGS data of short viral genomes | ||||||||||
| Fastv | 56 | 4 years ago | 1 | mit | C++ | |||||
| An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19. | ||||||||||
| Virtool | 41 | 3 months ago | 9 | mit | Python | |||||
| Viral infection diagnostics using next-generation sequencing | ||||||||||
| Iva | 37 | 3 years ago | 16 | January 25, 2018 | 9 | gpl-3.0 | Python | |||
| de novo virus assembler of Illumina paired reads | ||||||||||
| Uniquekmer | 33 | 2 years ago | 3 | mit | C | |||||
| Generate unique KMERs for every contig in a FASTA file | ||||||||||
| Prophyle | 30 | 5 months ago | 53 | August 23, 2021 | 41 | mit | Python | |||
| Accurate, resource-frugal and deterministic DNA sequence classifier. | ||||||||||
| Virtus | 28 | 2 years ago | 4 | other | Common Workflow Language | |||||
| A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing. | ||||||||||
| Vapid | 27 | 3 years ago | 3 | other | Shell | |||||
| VAPiD: Viral Annotation and Identification Pipeline | ||||||||||
| Vigen | 24 | a year ago | ||||||||
| viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data | ||||||||||
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Java
Bioinformatics
Virus