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Search results for bioinformatics protein sequences
bioinformatics
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protein-sequences
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25 search results found
Biojava
⭐
564
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Dnanalyzer
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122
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
Peptides
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71
An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
Lambda
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70
LAMBDA – the Local Aligner for Massive Biological DatA
Protflash
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62
ProtFlash: A lightweight protein language model
Pymod
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61
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
Protr
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50
🧬 Toolkit for generating various numerical features of protein sequences
Finder
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44
A fully automated gene annotator from RNA-Seq expression data
Rcpi
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28
Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.
Sequencework
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22
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
Propy3
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20
A Python 3 version of the protein descriptor package propy
Graph Part
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16
A biological sequence data partitioning method
Deepcoil
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16
Fast and accurate prediction of coiled coil domains in protein sequences.
Proteinsolver
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12
Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.
Gotranseq
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11
convert nucleic sequence in protein sequence
Cazy_webscraper
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10
Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
Protein Feature Extraction
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10
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
Seqshuffle.jl
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9
Shuffle the string sequences such that the k-mer frequency is preserved in each string
Blss
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8
A suite of unique bioinformatics tools for the brave explorer.
Seqr
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8
fast and comprehensive k-mer counting package
Plaac
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8
Prion-Like Amino Acid Composition
Python_scripts
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7
scripts for parsing PDB, fasta, and GO
Dotplot
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7
Simple visualisation tool for sequences' similarity in bioinformatics
Caastools
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7
CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
Aa_subtypes
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7
Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
Blast Binder
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6
Repo for running command line-based BLAST in Jupyter environment provided via Binder.
Mhc Peptides Prediction
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6
A set of different models, that predict the degree of binding of peptide proteins.
Protpy
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5
Calculating a range of protein descriptors using their physicochemical, biological and structural properties 🔬.
Protein_optimize
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5
A software tool designed for protein optimization, ProteinOpti integrates sequence manipulation with structural analysis, streamlining the generation, prediction, and evaluation of protein variants using Google Colab.
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