Seqr Alternatives

fast and comprehensive k-mer counting package
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Alternatives To slowikj/seqR
Project Name Stars Downloads Repos Using This Packages Using This Most Recent Commit Total Releases Latest Release Open Issues License Language
jermp/sshash 77 0 0 over 2 years ago 0 5 mit C++
A compressed, associative, exact, and weighted dictionary for k-mers.
bcgsc/ntHash 76 0 0 almost 3 years ago 0 1 mit C++
Fast hash function for DNA/RNA sequences
jermp/lphash 33 0 0 almost 3 years ago 0 1 mit C++
Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
jermp/fulgor 22 0 0 over 2 years ago 0 2 mit C++
A fast and compact k-mer index for large-scale matching and color queries.
shenwei356/countminsketch 12 0 0 about 10 years ago 1 May 19, 2016 0 mit Go
An implementation of Count-Min Sketch in Golang
slowikj/seqR 8 0 0 over 4 years ago 1 September 15, 2021 7 C++
fast and comprehensive k-mer counting package
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