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9 search results found

Omicverse ⭐ 159

A python library for multi omics included bulk and single cell RNA-seq analysis.

Omiclearn ⭐ 50

🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data

Volcano3d ⭐ 28

An R package to plot interactive three-way differential expression analysis

Omicselector ⭐ 26

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

Omicnavigator ⭐ 21

Open-Source Software for Omic Data Analysis and Visualization

Omicspls ⭐ 20

R package for High dimensional data analysis and integration with O2PLS!

Pyiomica ⭐ 13

PyIOmica (pyiomica) is a Python package for omics analyses.

Single sample pathway analysis tools for omics data

Decontaminer ⭐ 5

DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS da

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