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Search results for omics

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Awesome Omics ⭐ 536

A collection of awesome things regarding all omics.

Omicverse ⭐ 159

A python library for multi omics included bulk and single cell RNA-seq analysis.

Mixomics ⭐ 126

Development repository for the Bioconductor package 'mixOmics '

Omicsplayground ⭐ 112

Visual self-service analytics platform for big omics data.

Omiclearn ⭐ 50

🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data

Picotti lab data analysis package.

From geospatial to spatial -omics

compositional data analysis toolbox

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

Bidd Aggmap ⭐ 30

Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool

Volcano3d ⭐ 28

An R package to plot interactive three-way differential expression analysis

Omicselector ⭐ 26

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

Omicnavigator ⭐ 21

Open-Source Software for Omic Data Analysis and Visualization

Omicspls ⭐ 20

R package for High dimensional data analysis and integration with O2PLS!

Omicsintegrator2 ⭐ 20

Prize-Collecting Steiner Forests for Interactomes

Microbiomestat ⭐ 18

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Enrich_omics ⭐ 15

A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)

Enzyme-constrained genome-scale models in python

Framework for efficient high-dimensional association analyses.

CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Pyiomica ⭐ 13

PyIOmica (pyiomica) is a Python package for omics analyses.

A visualization tool for Systems-Level Interactive Data Exploration

R Package for Systematic Optimization of Metabolomic Data Processing

BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data

Amazon Omics Webapp Integrations ⭐ 9

This project contains the webapp sample integrated with Amazon Omics, which allows users such as admin and bioinformaticians to operate Amazon Omics workflow easily and check the run command status with charts and tables.

Bfabricshiny ⭐ 8

Manage life sciences data using R and b-fabric - a WSDL/REST interface and a tool box; main focus on MS data

A spatially explicit trait- and individual-based microbial systems modelling framework

The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.

A python package for standardized and reproducible processing, analysis, and integration of clinical proteomics data

Single sample pathway analysis tools for omics data

Tomographer ⭐ 7

The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following article: https://www.nature.com/articles/s41587-021-00879-7

Vitessce Data ⭐ 6

Utils for loading HuBMAP data formats

A simple python package for doublet detection in scRNA-seq data

Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)

An python omics data toolkit for the analysis across biological scales

Decontaminer ⭐ 5

DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS da

Ctlmapping ⭐ 5

Correlated Trait Locus (CTL) mapping

Multi Omics State Of The Field ⭐ 5

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

Genocraft ⭐ 5

GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization

1-41 of 41 search results

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