Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for bioinformatics kmer
bioinformatics
x
kmer
x
14 search results found
Khmer
⭐
729
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Sourmash
⭐
431
Quickly search, compare, and analyze genomic and metagenomic data sets.
Smudgeplot
⭐
200
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Spacegraphcats
⭐
112
Indexing & querying large assembly graphs -- in space, no one can hear you miao!
Mccortex
⭐
86
De novo genome assembly and multisample variant calling
Yak
⭐
83
Yet another k-mer analyzer
Sshash
⭐
77
A compressed, associative, exact, and weighted dictionary for k-mers.
Ganon
⭐
73
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
Kmer Db
⭐
68
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
Metabuli
⭐
54
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
Ska.rust
⭐
35
Split k-mer analysis – version 2
Uniquekmer
⭐
33
Generate unique KMERs for every contig in a FASTA file
Lphash
⭐
33
Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
Rkmh
⭐
32
Classify sequencing reads using MinHash.
Charcoal
⭐
31
Remove contaminated contigs from genomes using k-mers and taxonomies.
Prophyle
⭐
30
Accurate, resource-frugal and deterministic DNA sequence classifier.
Stringmlst
⭐
27
Fast k-mer based tool for multi locus sequence typing (MLST)
Krust
⭐
26
counts k-mers, written in rust
Phist
⭐
22
Phage-Host Interaction Search Tool
Fulgor
⭐
22
A fast and compact k-mer index for large-scale matching and color queries.
Tiptoft
⭐
20
Predict plasmids from uncorrected long read data
Kgwasflow
⭐
19
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Mof Search
⭐
18
BLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours
Discount
⭐
14
Very large scale k-mer counting and analysis on Apache Spark.
Taxor
⭐
13
Fast and space-efficient taxonomic classification of long reads
Dna Sequence Classification
⭐
12
Analysis of DNA Sequence Classification Using Neural Networks - Bioinformatics Course Project - Winter 2022
Skc
⭐
12
Shared k-mer content between two genomes
Kmerdb
⭐
10
Python bioinformatics CLI for k-mer count distribution and transition probabilities.
Kmercamel
⭐
9
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
Kec
⭐
8
Unique sequence search by K-mer exclusion
Kmer Counter
⭐
8
Count kmers with a more efficient (faster) hash table
Seqr
⭐
8
fast and comprehensive k-mer counting package
Rs Vgaligner
⭐
7
Rust implementation of ekg's dozyg
Miniphy
⭐
7
Phylogenetic compression of extremely large genome collections [661k ↘𝟏𝟕.𝟓𝐆𝐁, BIGSIdata ↘𝟓𝟐 𝐆𝐁]
Supersampler
⭐
6
SuperSampler, an efficient scaled size sketching and sketch comparison tool
Shiny K Mers
⭐
5
An R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
Focus
⭐
5
FOCUS: An Agile Profiler for Metagenomic Data
Circrna_tools_comparison
⭐
5
This repository contains the results and comparison visualization of circRNA candidates detected by circRNA prediction softwares.
Related Searches
Python Bioinformatics (2,069)
Bioinformatics Genomics (660)
R Bioinformatics (490)
Genome Bioinformatics (436)
Jupyter Notebook Bioinformatics (306)
Pipeline Bioinformatics (294)
C Plus Plus Bioinformatics (267)
Bioinformatics Sequencing (239)
Bioinformatics Fasta (223)
Bioinformatics Dna (209)
1-14 of 14 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.