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3 search results found

Jellyfish ⭐ 419

A fast multi-threaded k-mer counter

Deep Feature Interaction Maps (DFIM)

A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings

Rtfbs_db ⭐ 21

Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.

Deepbind With Pytorch ⭐ 15

CNN architecture for predicting DNA binding sites for Transcription Factors

Tfregulomer ⭐ 13

TFregulomeR reveals transcription factors’ context-specific features and functions

Materials presented at the BiocNYC meet-up

Neurobind ⭐ 11

Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences

Transcriptionfactorprofiling ⭐ 8

Profiling of transcription factor binding sites in cell-free DNA

DNA/RNA folding in Nim

ChExMix: the ChIP-exo mixture model

Detectdesign ⭐ 5

toolkit for finding likely cas9 off-target binding and effect on gene expression, designing sgRNAs and pairs of sgRNAs with minimal off-target effect on gene-expression

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1-3 of 3 search results

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