Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for protein
protein
x
1,092 search results found
Manuscript_ab_epitope_interaction
⭐
14
Orthomcl
⭐
14
Coronavirus Knowledge Graph
⭐
14
OBSOLETE: Prototype Neo4j Knowledge Graph for Coronavirus outbreaks (new version: https://github.com/sbl-sdsc/coronavirus-knowledge-
Deepcrystal
⭐
14
DeepCrystal: A Deep Learning Framework for sequence-based Protein Crystallization Prediction
Meta Proteome Analyzer
⭐
14
MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
Multiphate
⭐
14
Throughput PhATE processing of draft or finished phage genomes
Pybindingcurve
⭐
14
Binding curve simulation and experimental data fitting for multi component protein-ligand systems
Topefind Public
⭐
14
Finding the pitfalls of deep learning predictors of interacting residues in antibodies 🦠
Gcn For Structure And Function
⭐
14
Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
Mrcfile.jl
⭐
14
Read and write files and manipulate data in the MRC2014 format
Sword
⭐
14
SWORD - a highly efficient protein database search
Bmi219 2017 Proteinfolding
⭐
14
UCSF BMI219 Deep Learning (2017), Coding example (Prediction of protein folding with RNN and CNN)
Cocoscore
⭐
14
CoCoScore: context-aware co-occurrence scores for text mining applications
Dnapacman
⭐
14
waka waka
P2rank Datasets
⭐
14
Datasets for P2Rank project. https://github.com/rdk/p2rank
Bindpredict
⭐
14
Prediction of binding residues for metal ions, nucleic acids, and small molecules.
Deltavina
⭐
14
DeltaVina scoring function
Bioinformatics
⭐
14
Bioinformatics Workflows
Pwas
⭐
14
Proteome-Wide Association Study
Dockingml
⭐
14
A package for MD, Docking and Machine learning drug discovery pipeline
Dsol_rv0.2
⭐
13
deep protein solubility prediction
Egad
⭐
13
Gene network analysis
Nextprot Js
⭐
13
JavaScript library that communicates with neXtProt API - From SIB CALIPHO group; neXtProt project
Treeasy
⭐
13
A tool to infer species tree and phylogenetic network from multilocus data
Drawproteins
⭐
13
Creating package to draw proteins from Uniprot API
Bakkbenchmark
⭐
13
Tagger
⭐
13
Pycoevol
⭐
13
A Python workflow to study protein-protein coevolution and interaction
Biobtree
⭐
13
A bioinformatics tool to search, map and retrieve identifiers, keywords and attributes
Progeo Neo
⭐
13
a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection
Lib310
⭐
13
lib310 python package
Respre
⭐
13
ResPRE is an algorithm for protein residue-residue contact-map prediction
Reutils
⭐
13
Talk to the NCBI EUtils
Pyvol
⭐
13
volume calculation and segmentation
Emg Toolkit
⭐
13
MGnify API toolkit
Scina
⭐
13
SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
Smartas
⭐
13
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
Nanotext
⭐
13
Proteins as words, genomes as documents.
Proteoq
⭐
13
Processing and analysis of proteomics data
Epic
⭐
13
This is the public repository for the EPIC tool.
Protfeat
⭐
13
ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.
Protein_complex_maps
⭐
13
Kdrew's scripts for handling protein complex map data
Cbh21 Protein Solubility Challenge
⭐
13
Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinformatics Hackathon 2021.
Protein Uq
⭐
13
Benchmarking uncertainty quantification methods on proteins.
Pconsc2
⭐
13
Improved contact predictions using the recognition of protein like contact patterns.
Cafa2
⭐
13
Matlab Evaluation codes for the 2nd CAFA experiment
Sbm Openmm
⭐
13
Python library to run structure based model (SBM) simulations using the OpenMM toolkit
De Stress
⭐
13
DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
Lm Gvp
⭐
13
LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure
Vigor4
⭐
13
VIGOR4
Compositions
⭐
13
Detailed nutrient composition of 528 key foods in India.
Lightdock Rust
⭐
13
A Rust implementation of the LightDock macromolecular docking software
Emacs Pdb Mode
⭐
12
pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.
Deepseq
⭐
12
Code for paper titled, "Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins". Preprint available at: http://www.biorxiv.org/content/early/2017/07/25/16
Onekp
⭐
12
Access sequences from the 1000 Plant Initiative (1KP)
Nerfax
⭐
12
An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.
Proda
⭐
12
Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
Amino Acid Embedding
⭐
12
🔬 Train an Amino Acid Embeddings (or a dragon?)
Ppi Typed Relation Extractor
⭐
12
Relation extraction for protein to protein interactions to extraction strongly typed PPI relations.. My research topic.. So work in progress
Pfind3
⭐
12
Viralrecall
⭐
12
Detection of NCLDV signatures in 'omic data
Awesome Whole Cell Simulation
⭐
12
MOVING TO: https://github.com/cirosantilli/cirosantilli.githu SEE README. Because sometimes you just want to simulate single prokaryotic biological living whole cell models starting from DNA to minute detail to understand how it works and predict simple experimental observations.
Fathmm
⭐
12
The Functional Analysis through Hidden Markov Models Software and Server
Deepcseqsite
⭐
12
Protein-ligand binding sites prediction toolkits
Dante
⭐
12
Domain based annotation of transposable elements
Sdrf Pipelines
⭐
12
A repository to convert SDRF proteomics files into pipelines config files
Tps
⭐
12
Temporal Pathway Synthesizer
Pdb_eda
⭐
12
A Python tool for parsing and analyzing electron density maps data available from the worldwide Protein Data Bank
Cspred
⭐
12
UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine learning module that makes predictions from features extracted from the 3D structures of the proteins.
Pathways
⭐
12
Disease pathways in the human interactome
Deeppbs
⭐
12
Protein Backbone Strurcture Prediction based on deeplearning
Bitenet
⭐
12
Spatiotemporal identification of druggable binding sites using deep learning
Dips
⭐
12
Database of Interacting Protein Structures (DIPS)
Pconsc3
⭐
12
Faster, more accurate and entirely open source method for predicting contacts in proteins
Deepalign
⭐
12
DeepAlign: the protein structure analysis toolkit
S2f
⭐
12
S2F: protein function without experiments
Cryosparc2_public
⭐
12
CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The cryoSPARC platform enables automated, high quality and high-throughput structure discovery of proteins, viruses and molecular complexes for research and drug discovery.
Brewery
⭐
12
State-of-the-art ab initio prediction of 1D protein structure annotations
Omamer
⭐
12
OMAmer - tree-driven and alignment-free protein assignment to sub-families
Rfscorevs_binary
⭐
12
RF-Score-VS binary
Deltabs
⭐
12
Quantifying the significance of genetic variation using probabilistic profile-based methods.
Proteinsolver
⭐
12
Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.
Appris
⭐
12
Annotating principal splice isoforms
Chess
⭐
12
Comprehensive Human Expressed SequenceS
Proteindf
⭐
12
Canonical (Kohn-Sham) molecular orbital calculation software for large molecules such as protein
Mebs
⭐
12
Protocol for finding informative protein families and then using them to score omic samples
Fmol
⭐
12
A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and checking the druggability with fpocket/Amber.
Gotranseq
⭐
11
convert nucleic sequence in protein sequence
Prankwebapp
⭐
11
Web application for protein-ligand binding sites analysis and visualization
Phagehosts
⭐
11
This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computational approaches to predict bacteriophage–host relationships. FEMS Microbiology Reviews doi: 10.1093/femsre/fuv048
Neurobind
⭐
11
Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences
Proteny
⭐
11
A tool to analyze synteny at the protein level.
Enlighten2
⭐
11
Protocols and tools to run (automated) atomistic simulations of enzyme-ligand systems
Proxl Web App
⭐
11
ProXL Web App -- Visualize and Share Protein Cross-linking Data
Genodup Pipeline
⭐
11
This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.
Rosalind
⭐
11
A repository for my solutions to problems from - http://www.rosalind.info
Msgfgui
⭐
11
A gui overlay and extension for MSGFplus
Comer2
⭐
11
Fast, sensitive and accurate protein remote homology search on GPUs
Plmdca
⭐
11
Sars Cov 2 Synthesis
⭐
11
Ginkgo SARS-CoV-2 synthesis efforts: overviews and data
Related Searches
Python Protein (1,344)
Jupyter Notebook Protein (296)
Protein Pdb (285)
Bioinformatics Protein (282)
R Protein (245)
Interaction Protein (204)
501-600 of 1,092 search results
< Previous
Next >
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.