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The Top 23 Shell Ngs Open Source Projects

Open source projects categorized as Shell Ngs
Ngs ⭐ 1,252
Next Generation Shell (NGS)
most recent commit 3 months ago
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Ngseasy ⭐ 76
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
most recent commit 7 years ago
Grape Nf ⭐ 35
An automated RNA-seq pipeline using Nextflow
most recent commit 10 months ago
Ngsdat2 ⭐ 28
NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)
most recent commit 3 years ago
Vapid ⭐ 27
VAPiD: Viral Annotation and Identification Pipeline
most recent commit 3 years ago
Ctdna Pipeline ⭐ 24
A simplified pipeline for ctDNA sequencing data analysis
most recent commit 7 years ago
Comparative_genomics ⭐ 24
Micro 612 genomics workshop
most recent commit 3 years ago
Ngs Variants Training ⭐ 22
GitHub for the SIB courses NGS - Genome variant analysis
most recent commit 5 months ago
Plasmidid ⭐ 22
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
most recent commit 3 years ago
Molgenis Pipelines ⭐ 20
Pipelines for NGS, imputation, gwas, ...
most recent commit 4 years ago
Tracespipe ⭐ 16
Reconstruction and analysis of viral and host genomes at multi-organ level
most recent commit 10 months ago
Ebi_cancer_workshop_cnv ⭐ 14
hands-on for NGS/SNParray CNV call trainning
most recent commit 2 years ago
Angsd Wrapper ⭐ 13
Utilities for analyzing next generation sequencing data.
most recent commit 4 years ago
Ngs_dna ⭐ 13
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
most recent commit 3 months ago
Prophage_tracer ⭐ 13
Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
most recent commit a year ago
Lepmap2_workflow ⭐ 12
Pipeline for linkage map construction from NGS data
most recent commit a year ago
Fqless ⭐ 11
less like viewer for fastq files
most recent commit 5 years ago
Deepvariant On Spark ⭐ 11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
most recent commit 2 years ago
Pgkb Ngs Pipeline ⭐ 10
PharmGKB NGS Pipeline
most recent commit 6 years ago
Dockstore Cgpwgs ⭐ 9
Dockstore implementation of CGP core WGS analysis
most recent commit 4 years ago
Esviritu ⭐ 7
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
most recent commit 5 months ago
Ngs Cli ⭐ 7
Release location for the synadia global messaging service CLI
most recent commit 2 years ago
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