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The Top 23 Python Ngs Open Source Projects

Open source projects categorized as Python Ngs
Pathogen Profiler ⭐ 8
This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data
most recent commit 7 months ago
Ansible Pipelines ⭐ 8
most recent commit 4 months ago
Nhc ⭐ 7
NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
most recent commit 7 months ago
Pyten ⭐ 7
Python Package for Tensor Completion Algorithms
most recent commit 5 years ago
Htsinfer ⭐ 7
HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data
total releases 1most recent commit 4 months ago
Test_tools_single_variation ⭐ 7
The pipeline is used for testing different call-variation tools.
most recent commit 6 years ago
Ngs_mapper ⭐ 7
Genome Mapping Pipeline
most recent commit 5 months ago
Microhapdb ⭐ 7
Portable database of microhaplotype marker and allele frequency data
total releases 13most recent commit 7 months ago
Appliedgenomeresearch ⭐ 6
course about NGS data processing: genomics and transcriptomics
most recent commit 3 years ago
Onlineadapterdatabase ⭐ 6
Linking publicly deposited data to sequencing adapters.
most recent commit 6 years ago
Bam Lorenz Coverage ⭐ 6
Generate Lorenz plots and Coverage plots directly from BAM files
most recent commit 2 years ago
Eklipse ⭐ 6
a tool for predicting mitochondrial DNA deletions using soft-clipping
most recent commit 2 years ago
Fings ⭐ 6
Filters for Next Generation Sequencing
most recent commit 2 years ago
Banzaidb ⭐ 6
BanzaiDB is a tool for pairing Microbial Genomics Next Generation Sequencing (NGS) analysis with a NoSQL database.
total releases 3most recent commit 10 years ago
Ngshelper ⭐ 6
NGShelper is a set of tools useful to performance some tasks related to NGS analysis.
most recent commit a year ago
Quasitools ⭐ 6
Quasitools is a collection of tools for analysing viral quasispecies data.
most recent commit 4 years ago
Genobox ⭐ 5
Alignment, Assembly and Genotyping of NGS data
most recent commit 11 years ago
Egasub ⭐ 5
EGASub - ICGC EGA Submission CLI
total releases 13most recent commit 6 years ago
Satminer ⭐ 5
satMiner: A Toolkit to NGS satellite DNA mining and analysis
most recent commit 2 years ago
Cutprimers ⭐ 5
curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
most recent commit 4 years ago
Snakemake Slurm Tutorial ⭐ 5
Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler
most recent commit 6 years ago
Snakeflows ⭐ 5
Collective Snakemake workflows for easy and reproducible NGS data analysis.
most recent commit 9 months ago
Kcri Cge Bap ⭐ 5
KCRI CGE Bacterial Analysis Pipeline
most recent commit 6 months ago
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