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The Top 16 Python Ngs Rna Seq Open Source Projects

Open source projects categorized as Python Ngs Rna Seq
Categories > Science > Ngs
Categories > Rna Seq
Deeptools ⭐ 644
Tools to process and analyze deep sequencing data.
most recent commit 19 days ago
Snakepipes ⭐ 359
Customizable workflows based on snakemake and python for the analysis of NGS data
most recent commit 3 months ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Isoquant ⭐ 98
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
most recent commit 4 months ago
Spark ⭐ 81
Publication quality NGS track plotting
most recent commit 2 years ago
Pipeliner ⭐ 44
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
most recent commit 9 months ago
Ngs_pipeline ⭐ 31
Exome/Capture/RNASeq Pipeline Implementation using snakemake
most recent commit 6 years ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29most recent commit a year ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Open_pipelines ⭐ 17
Pipelines for NGS data preprocessing by the Bock lab and friends
most recent commit 2 years ago
Toolkit ⭐ 13
A toolkit for NGS analysis with Python
total releases 32most recent commit a year ago
Star Seqr ⭐ 9
RNA Fusion Detection and Quantification
total releases 24most recent commit 5 years ago
Captus ⭐ 8
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
most recent commit 3 months ago
Bam Lorenz Coverage ⭐ 6
Generate Lorenz plots and Coverage plots directly from BAM files
most recent commit 2 years ago
Rediscover ⭐ 5
RNA editing discovery from NGS data.
most recent commit 5 years ago
The 3 Latest Releases In Python Ngs Rna Seq Open Source Projects
Toolkit ⭐ 13
A toolkit for NGS analysis with Python
total releases 32latest release September 23, 2019most recent commit a year ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29latest release September 21, 2018most recent commit a year ago
Star Seqr ⭐ 9
RNA Fusion Detection and Quantification
total releases 24latest release April 06, 2018most recent commit 5 years ago
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