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The Top 23 Visualization Genome Open Source Projects

Open source projects categorized as Visualization Genome
Categories > Science > Genome
Categories > User Interface > Visualization
Awesome Genome Visualization ⭐ 663
A list of interesting genome browser or genome-browser-like implementations
most recent commit 3 months ago
Quast ⭐ 327
Genome assembly evaluation tool
most recent commit 8 months ago
Pycircos ⭐ 277
python Circos
dependent packages 2total releases 3most recent commit 5 months agopypi python-circos} Downloads
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76most recent commit 3 months agonpm ideogram} Downloads
Ribbon ⭐ 249
A genome browser that shows long reads and complex variants better
most recent commit a year ago
Genvisr ⭐ 188
Genome data visualizations
most recent commit a year ago
Methylkit ⭐ 176
R package for DNA methylation analysis
most recent commit 3 months ago
Ngb ⭐ 151
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
most recent commit 3 months ago
Mcscanx ⭐ 135
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
most recent commit a year ago
Sigminer ⭐ 119
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/
total releases 32most recent commit 4 months ago
Genomic Interactive Visualization Engine ⭐ 108
Genomic Interactive Visualization Engine
most recent commit 4 years ago
Hic Data Analysis Bootcamp ⭐ 78
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
most recent commit 6 years ago
Epiviz ⭐ 66
EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.
most recent commit a year ago
Pan Genome Analysis ⭐ 61
Processing pipeline for pan-genome visulization and exploration
most recent commit 4 years ago
Splitthreader ⭐ 60
Explore rearrangements and copy-number amplifications in a cancer genome
most recent commit 3 years ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Genomegtftools ⭐ 52
convert various features into a GFF-like file for use in genome browsers
most recent commit 5 months ago
Cnview ⭐ 50
Visualization and annotation of CNVs from population-scale whole-genome sequencing data
most recent commit 6 years ago
Fluentdna ⭐ 43
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
total releases 3most recent commit 3 years ago
Genova ⭐ 43
GENome Organisation Visual Analytics
most recent commit a year ago
Awesome Biological Visualizations ⭐ 41
A list of web-based interactive biological data visualizations.
most recent commit 3 years ago
Metapop ⭐ 28
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
most recent commit a year ago
3d Genome Processing Tutorial ⭐ 28
A 3D genome data processing tutorial for ISMB/ECCB 2017
most recent commit 7 years ago
The 2 Most Depended On Visualization Genome Open Source Projects
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76latest release September 05, 2023most recent commit 3 months agonpm ideogram} Downloads
Pycircos ⭐ 277
python Circos
dependent packages 2total releases 3latest release April 09, 2022most recent commit 5 months agopypi python-circos} Downloads
The 7 Latest Releases In Visualization Genome Open Source Projects
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76latest release September 05, 2023most recent commit 3 months agonpm ideogram} Downloads
Tripal_jbrowse ⭐ 7
Drupal/Tripal: Drupal integration for GMOD JBrowse instances.
total releases 2latest release January 27, 2023most recent commit a year ago
Pycircos ⭐ 277
python Circos
dependent packages 2total releases 3latest release April 09, 2022most recent commit 5 months agopypi python-circos} Downloads
Soda ⭐ 12
Python-based UCSC genome browser snapshot-taker and gallery-maker
total releases 2latest release June 14, 2021most recent commit 3 years ago
Afplot ⭐ 6
Plot allele frequencies in VCF files
total releases 3latest release July 11, 2017most recent commit 5 years ago
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