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The Top 23 Variants Genome Open Source Projects

Open source projects categorized as Variants Genome
Categories > Science > Genome
Categories > Variants
Pyseqarray ⭐ 12
PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
most recent commit 7 years ago
Cava ⭐ 12
CAVA (Clinical Annotation of VAriants)
most recent commit 6 years ago
Bcfanno ⭐ 12
A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file
most recent commit 4 years ago
Seave ⭐ 12
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling fr
most recent commit 6 years ago
Genevar ⭐ 12
most recent commit 3 years ago
Hg002 Ccs ⭐ 12
most recent commit 3 years ago
Cruk Summer School 2017 ⭐ 11
Analysis of Cancer Genomes; 2017 edition
most recent commit 6 years ago
Npsv ⭐ 11
Non-parametric structural variant genotyper
most recent commit 3 years ago
Forge ⭐ 11
Code for building and testing variant ranking strategies
most recent commit 5 years ago
Dasvc ⭐ 11
De-novo Assembly Structural Variant Caller
most recent commit 8 years ago
Illumina Array Protocols ⭐ 11
processing illumina SNP arrays
most recent commit 7 years ago
Ccr ⭐ 11
Building the constrained coding regions (CCR) model
most recent commit 5 years ago
Computational Genome Analysis ⭐ 11
Website for Computational Exome and Genome Analysis
most recent commit 5 years ago
Metagwastoolkit ⭐ 10
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
most recent commit 5 months ago
Topmed_freeze3_calling ⭐ 10
TOPMed Freeze 3 variant calling pipeline
most recent commit 5 years ago
Jarvis ⭐ 9
JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
most recent commit 2 years ago
Psite ⭐ 9
Simulate next-generation sequencing reads for tumor samples
most recent commit 3 years ago
Baga ⭐ 9
Bacterial and Archaeal Genome Analyser
most recent commit 6 years ago
Pangenomics ⭐ 9
most recent commit 6 years ago
Sopang ⭐ 9
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
most recent commit 4 years ago
Ctdnasomaticvariantcall.jl ⭐ 9
Somatic Variant Call for ctDNA
most recent commit 8 years ago
Whatsgnu ⭐ 8
WhatsGNU: a tool for identifying proteomic novelty
most recent commit a year ago
Gatk For Microbes ⭐ 8
most recent commit 3 years ago
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