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The Top 23 Python Genome Open Source Projects

Open source projects categorized as Python Genome
Categories > Science > Genome
Persvade ⭐ 27
perSVade: personalized Structural Variation detection
most recent commit 9 months ago
Nucdiff ⭐ 27
In-depth characterization and annotation of differences between two sets of DNA sequences
total releases 4most recent commit 4 years ago
Vapid ⭐ 27
VAPiD: Viral Annotation and Identification Pipeline
most recent commit 3 years ago
Is_mapper ⭐ 26
IS mapping software
most recent commit 2 years ago
Genipe ⭐ 26
Genome-wide imputation pipeline
total releases 13most recent commit 3 years ago
Metacompass ⭐ 26
MetaCompass: Reference-guided Assembly of Metagenomes
most recent commit 3 years ago
Pytorch Cns ⭐ 26
Generalized Compressed Network Search with PyTorch
total releases 10most recent commit 7 years ago
Clusterdbanalysis ⭐ 26
ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes
most recent commit 5 years ago
Dbnet_tensorflow ⭐ 26
most recent commit 6 years ago
Speciesprimer ⭐ 26
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
most recent commit a year ago
Teloclip ⭐ 26
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
total releases 3most recent commit 4 months ago
Paprica ⭐ 25
paprica - PAthway PRediction by phylogenetIC plAcement
most recent commit 4 months ago
Spraynpray ⭐ 25
Rapid and simple taxonomic profiling of genome and metagenome contigs
most recent commit a year ago
Pathoscope ⭐ 25
Pathoscope: Species identification and strain attribution with unassembled sequencing data
most recent commit 5 years ago
Annogesic ⭐ 25
ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes
total releases 192most recent commit 4 months ago
Neat Python ⭐ 25
Genetic learning algorithm implementation for simulations, games, or general machine learning problems
most recent commit 2 years ago
2018 Ncbi Lineages ⭐ 25
Extract lineage CSVs from NCBI for use with sourmash lca.
most recent commit 7 months ago
Telr ⭐ 25
TELR is a fast non-reference transposable element detector from long read sequencing data.
most recent commit a year ago
Pore C Snakemake ⭐ 25
most recent commit a year ago
Vcf2fasta ⭐ 25
Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
most recent commit 4 months ago
Coda ⭐ 25
Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
most recent commit 7 years ago
Te_density ⭐ 24
Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/article
most recent commit 8 months ago
Ai Tac ⭐ 24
most recent commit a year ago
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