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The Top 23 Python Genome Open Source Projects

Open source projects categorized as Python Genome
Categories > Science > Genome
Dna Traits ⭐ 64
A fast 23andMe genome text file parser, now superseded by arv
most recent commit 6 years ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Genomes Pipeline ⭐ 63
MGnify genome analysis pipeline
most recent commit 4 months ago
Tensorflow Neat ⭐ 63
TensorFlow Eager implementation of NEAT and Adaptive HyperNEAT
most recent commit 4 years ago
Nanosv ⭐ 63
SV caller for nanopore data
total releases 12most recent commit 5 years ago
Lorean ⭐ 62
Long Reads Annotation pipeline
most recent commit 2 years ago
Pan Genome Analysis ⭐ 61
Processing pipeline for pan-genome visulization and exploration
most recent commit 4 years ago
Panacota ⭐ 60
PANgenome with Annotations, COre identification, Tree and corresponding Alignments
total releases 8most recent commit 7 months ago
Enrichm ⭐ 60
Toolbox for comparative genomics of MAGs
total releases 42most recent commit 2 years ago
Uta ⭐ 59
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
most recent commit 3 months ago
Crossmap ⭐ 58
CrossMap is a python program to lift over genome coordinates from one genome version to another.
most recent commit 4 months ago
Phanotate ⭐ 58
PHANOTATE: a tool to annotate phage genomes.
total releases 12most recent commit 7 months ago
Woltka ⭐ 58
Woltka: a versatile meta'omic data classifier
total releases 4most recent commit 4 months ago
Fithic ⭐ 57
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
dependent packages 1total releases 22most recent commit 2 years agopypi fithic} Downloads
Transcriptclean ⭐ 57
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
most recent commit 9 months ago
Assembly Dereplicator ⭐ 57
A tool for removing redundant genomes from a set of assemblies
most recent commit 9 months ago
Primalscheme ⭐ 56
a tool for designing primer panels for multiplex PCR.
most recent commit a year ago
Gecko ⭐ 54
Toolbox for including enzyme constraints on a genome-scale model.
dependent packages 1total releases 11most recent commit 3 months agopypi geckopy} Downloads
Stretch ⭐ 54
Method for detecting STR expansions from short-read sequencing data
most recent commit 2 years ago
Flextaxd ⭐ 54
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
total releases 4most recent commit 5 months ago
Tigmint ⭐ 53
⛓ Correct misassemblies using linked AND long reads
total releases 1most recent commit 7 months ago
Homopolish ⭐ 53
High-quality Nanopore-only genome polisher
most recent commit a year ago
Ultra ⭐ 53
Long-read splice alignment with high accuracy
total releases 14most recent commit 10 months ago
The 10 Latest Releases In Python Genome Open Source Projects
Nucdiff ⭐ 27
In-depth characterization and annotation of differences between two sets of DNA sequences
total releases 4latest release May 18, 2020most recent commit 4 years ago
Sistr_cmd ⭐ 19
SISTR (Salmonella In Silico Typing Resource) command-line tool
total releases 13latest release April 30, 2020most recent commit a year ago
Abacat ⭐ 6
🥑 A Bacterial genome Comparison and Annotation Toolkit
total releases 2latest release April 04, 2020most recent commit 3 years ago
Helen ⭐ 52
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
total releases 19latest release March 23, 2020most recent commit 4 years ago
Magpurify ⭐ 10
Improvement of metagenome-assembled genomes
total releases 5latest release March 17, 2020most recent commit 4 years ago
Pwas ⭐ 14
Proteome-Wide Association Study
total releases 2latest release March 09, 2020most recent commit 3 years ago
Ngs Primerplex ⭐ 42
NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design
total releases 1latest release December 20, 2019most recent commit 10 months ago
Reveal ⭐ 39
Graph based multi genome aligner
total releases 2latest release November 22, 2019most recent commit 3 years ago
Genome_collector ⭐ 17
:stars: Easily download genomes and build BLAST/Bowtie indexes in Python
total releases 7latest release November 12, 2019most recent commit 2 years ago
Riboseed ⭐ 5
pipeline for using ribosomal flanking regions to improve bacterial genome assembly
total releases 76latest release October 30, 2019most recent commit 4 years ago
Popular Science Categories
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