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The Top 23 Protein Dna Open Source Projects

Open source projects categorized as Protein Dna
Categories > Science > Dna
Categories > Protein
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58most recent commit 3 months agopypi biopython} Downloads
Diamond ⭐ 900
Accelerated BLAST compatible local sequence aligner.
most recent commit 4 months ago
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86most recent commit 3 months agopypi pyfaidx} Downloads
Pyrosetta.notebooks ⭐ 399
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
most recent commit 3 months ago
Prolif ⭐ 286
Interaction Fingerprints for protein-ligand complexes and more
dependent packages 2total releases 20most recent commit 6 months agopypi prolif} Downloads
Lightdock ⭐ 234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 3 months ago
Seqviz ⭐ 191
a JavaScript DNA, RNA, and protein sequence viewer
dependent packages 2total releases 2most recent commit 3 months agonpm @phantomas1234/seqviz} Downloads
Tcga_example ⭐ 135
most recent commit 5 years ago
Buddysuite ⭐ 105
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
total releases 18most recent commit 2 years ago
Bioblender ⭐ 98
AddOn for Blender to do molecular work
most recent commit 4 years ago
Fasta36 ⭐ 95
Git repository for FASTA36 sequence comparison software
most recent commit 8 months ago
Tcoffee ⭐ 77
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
most recent commit 10 months ago
Fm Index ⭐ 71
FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental results.
most recent commit 9 years ago
Pyfeat ⭐ 68
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
most recent commit 2 years ago
Crisprcasfinder ⭐ 54
A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
most recent commit 9 months ago
Jolecule ⭐ 48
Javascript viewer for proteins and DNA with animated views
most recent commit 10 months ago
Bioblender21 ⭐ 47
Blender plugin to process biological data and molecular work.
most recent commit 2 years ago
Sequence_manipulation_suite ⭐ 45
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
most recent commit 7 months ago
Fluentdna ⭐ 43
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
total releases 3most recent commit 3 years ago
Hmmer2go ⭐ 36
Annotate DNA sequences for Gene Ontology terms
most recent commit 2 years ago
Naf ⭐ 32
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
most recent commit 2 years ago
Gromacs_ff ⭐ 31
Trusted force field files for gromacs
most recent commit 3 months ago
Orfipy ⭐ 25
Fast and flexible ORF finder
total releases 4most recent commit 2 years ago
The 6 Most Depended On Protein Dna Open Source Projects
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58latest release February 13, 2023most recent commit 3 months agopypi biopython} Downloads
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months agopypi pyfaidx} Downloads
Bionode Seq ⭐ 7
Module for DNA, RNA and protein sequences manipulation
dependent packages 4total releases 1latest release September 02, 2014most recent commit 7 years agonpm bionode-seq} Downloads
Protein ⭐ 8
Simple code generator
dependent packages 2total releases 6latest release January 24, 2015most recent commit 8 years agonpm proteinjs} Downloads
Seqviz ⭐ 191
a JavaScript DNA, RNA, and protein sequence viewer
dependent packages 2total releases 2latest release July 13, 2022most recent commit 3 months agonpm @phantomas1234/seqviz} Downloads
Prolif ⭐ 286
Interaction Fingerprints for protein-ligand complexes and more
dependent packages 2total releases 20latest release October 11, 2023most recent commit 6 months agopypi prolif} Downloads
The 10 Latest Releases In Protein Dna Open Source Projects
Open3spn2 ⭐ 16
An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
total releases 7latest release October 24, 2023most recent commit 5 months ago
Prolif ⭐ 286
Interaction Fingerprints for protein-ligand complexes and more
dependent packages 2total releases 20latest release October 11, 2023most recent commit 6 months agopypi prolif} Downloads
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months agopypi pyfaidx} Downloads
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58latest release February 13, 2023most recent commit 3 months agopypi biopython} Downloads
Gotranseq ⭐ 11
convert nucleic sequence in protein sequence
total releases 6latest release February 02, 2023most recent commit a year ago
Seqviz ⭐ 191
a JavaScript DNA, RNA, and protein sequence viewer
dependent packages 2total releases 2latest release July 13, 2022most recent commit 3 months agonpm @phantomas1234/seqviz} Downloads
Buddysuite ⭐ 105
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
total releases 18latest release December 06, 2021most recent commit 2 years ago
Orfipy ⭐ 25
Fast and flexible ORF finder
total releases 4latest release July 20, 2021most recent commit 2 years ago
Hydroid ⭐ 7
Python package for analyzing hydroxyl-radical footprinting experiments of DNA-protein complexes
total releases 5latest release December 24, 2017most recent commit 4 years ago
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