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The Top 19 Genome Comparative Genomics Open Source Projects

Open source projects categorized as Genome Comparative Genomics
Categories > Comparative Genomics
Categories > Science > Genome
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97most recent commit 4 months agopypi jcvi} Downloads
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76most recent commit 3 months agonpm ideogram} Downloads
Funannotate ⭐ 261
Eukaryotic Genome Annotation Pipeline
total releases 13most recent commit 5 months ago
Ppanggolin ⭐ 191
Build a partitioned pangenome graph from microbial genomes
total releases 6most recent commit 3 months ago
Sibeliaz ⭐ 113
A fast whole-genome aligner based on de Bruijn graphs
most recent commit 2 years ago
Orthologr ⭐ 68
Genome wide orthology inference and dNdS estimation
most recent commit 7 months ago
Quota Alignment ⭐ 44
Guided synteny alignment between duplicated genomes (within specified quota constraint)
most recent commit 7 years ago
Gcv ⭐ 32
Federating genomes with love (and synteny derived from functional annotations)
most recent commit 6 months ago
Panseq ⭐ 31
Pan-genomic sequence analysis
most recent commit 6 years ago
Segalign ⭐ 26
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC4140
most recent commit 2 years ago
Comparative_genomics ⭐ 24
Micro 612 genomics workshop
most recent commit 3 years ago
Gssplayground ⭐ 21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
most recent commit 4 years ago
Scarap ⭐ 20
A toolkit for prokaryotic comparative genomics
most recent commit 6 months ago
Mcscan ⭐ 17
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
most recent commit 14 years ago
Amoebae ⭐ 14
Workflow for identifying and classifying homologous gene/protein sequences
most recent commit a year ago
Positive Selection ⭐ 10
Scripts and procedures for detecting positively selected genes and codons in primates
most recent commit 3 years ago
Accusyn ⭐ 9
AccuSyn: An Accurate Web-based Genome Synteny Browser
most recent commit 3 years ago
Fishcomparativeatlas ⭐ 6
FishComparativeAtlas is a pipeline to trace the evolution of sister duplicated chromosomes derived from whole genome duplication in teleost genomes.
most recent commit a year ago
Teaching Comp Genomics Vis ⭐ 6
Comparative Genomics and Visualisation teaching module
most recent commit 6 years ago
The 2 Most Depended On Genome Comparative Genomics Open Source Projects
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76latest release September 05, 2023most recent commit 3 months agonpm ideogram} Downloads
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
The 4 Latest Releases In Genome Comparative Genomics Open Source Projects
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76latest release September 05, 2023most recent commit 3 months agonpm ideogram} Downloads
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
Funannotate ⭐ 261
Eukaryotic Genome Annotation Pipeline
total releases 13latest release August 10, 2022most recent commit 5 months ago
Ppanggolin ⭐ 191
Build a partitioned pangenome graph from microbial genomes
total releases 6latest release July 15, 2018most recent commit 3 months ago
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