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The Top 23 Java Biology Open Source Projects

Open source projects categorized as Java Biology
Jvarkit ⭐ 440
Java utilities for Bioinformatics
most recent commit 6 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8most recent commit 2 years ago
Cloud Pipeline ⭐ 137
Cloud agnostic genomics analysis, scientific computation and storage platform
most recent commit 3 months ago
Globalbioticinteractions ⭐ 114
Global Biotic Interactions provides access to existing species interaction datasets
most recent commit 4 months ago
Cellbase ⭐ 84
High-Performance NoSQL database and RESTful web services to access to most relevant biological data
dependent packages 3total releases 60most recent commit 3 months ago
Act ⭐ 59
Computational synthetic biology: Predicting DNA edits for bioengineering
most recent commit 7 years ago
Caleydo ⭐ 57
Caleydo - Visualization for Molecular Biology
most recent commit 7 years ago
Ibiosim ⭐ 50
iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models specified using the Systems Biology Markup Language (SBML). iBioSim also supports the Synthetic Biology Open Language (SBOL), an emerging standard for information exchange in synthetic biology.
most recent commit a year ago
Libsbolj ⭐ 33
Java Library for Synthetic Biology Open Language (SBOL)
dependent packages 2total releases 9most recent commit a year ago
Cas ⭐ 26
Cellular Automata Simulator
most recent commit 6 months ago
Sbscl ⭐ 19
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
most recent commit 10 months ago
Populus ⭐ 16
Simulations for population biology and evolutionary ecology
most recent commit 3 years ago
Nested Sampling ⭐ 10
Nested sampling packagin for BEAST
most recent commit 10 months ago
Curvetracing ⭐ 9
most recent commit 3 years ago
Libsbgn ⭐ 9
Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
dependent packages 1total releases 2most recent commit 2 years ago
Bgee_pipeline ⭐ 8
Source code of the Bgee pipeline used to build the Bgee database
most recent commit a year ago
Compaj ⭐ 8
Programming and numeric computing platform for math modeling and visualization with fully functional programming language
most recent commit a year ago
Biolaer ⭐ 7
Android Application - Biology Quiz
most recent commit 6 years ago
Bsim ⭐ 7
Agent-based modelling tool for bacterial populations in systems and synthetic biology
most recent commit 7 years ago
Clothobiofabedition ⭐ 7
Synthetic Biology Computer-Aided Design tool
most recent commit 13 years ago
Libsbolj3 ⭐ 6
A Java library for the Synthetic Biology Open Language version 3
most recent commit a year ago
Bactman Adventures ⭐ 5
Follow BactMan in his adventures to discover science with fun mini-games!
most recent commit 8 years ago
Clotho3crud ⭐ 5
Clotho
most recent commit 9 years ago
The 4 Most Depended On Java Biology Open Source Projects
Cellbase ⭐ 84
High-Performance NoSQL database and RESTful web services to access to most relevant biological data
dependent packages 3total releases 60latest release November 20, 2023most recent commit 3 months ago
Libsbolj ⭐ 33
Java Library for Synthetic Biology Open Language (SBOL)
dependent packages 2total releases 9latest release April 20, 2019most recent commit a year ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Libsbgn ⭐ 9
Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
dependent packages 1total releases 2latest release January 15, 2018most recent commit 2 years ago
The 4 Latest Releases In Java Biology Open Source Projects
Cellbase ⭐ 84
High-Performance NoSQL database and RESTful web services to access to most relevant biological data
dependent packages 3total releases 60latest release November 20, 2023most recent commit 3 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Libsbolj ⭐ 33
Java Library for Synthetic Biology Open Language (SBOL)
dependent packages 2total releases 9latest release April 20, 2019most recent commit a year ago
Libsbgn ⭐ 9
Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
dependent packages 1total releases 2latest release January 15, 2018most recent commit 2 years ago
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