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The Top 23 Science Bioinformatics Open Source Projects

Open source projects categorized as Science Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Science > Science
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 5 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Getting Started With Genomics Tools And Resources ⭐ 991
Unix, R and python tools for genomics and data science
most recent commit 3 months ago
Plantcv ⭐ 590
Plant phenotyping with image analysis
most recent commit 3 months ago
Awesome ⭐ 565
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
most recent commit 7 months ago
Nanopolish ⭐ 496
Signal-level algorithms for MinION data
most recent commit 9 months ago
Jvarkit ⭐ 440
Java utilities for Bioinformatics
most recent commit 6 months ago
Anvio ⭐ 396
An analysis and visualization platform for 'omics data
most recent commit 3 months ago
Bioconvert ⭐ 344
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
total releases 34most recent commit 5 months ago
Allensdk ⭐ 314
code for reading and processing Allen Institute for Brain Science data
dependent packages 23total releases 81most recent commit 5 months agopypi allensdk} Downloads
Awesome Biology ⭐ 313
Curated (meta)list of resources for Biology.
most recent commit 3 months ago
Homebrew Bio ⭐ 292
🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
most recent commit 3 months ago
Avogadro ⭐ 283
Avogadro 1 is not under active development, the repository was archived in September 2021. Development of Avogadro 2 is being done at https://github.com/openchemistry/avogadrolibs. Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
most recent commit 3 years ago
Abyss ⭐ 276
🔬 Assemble large genomes using short reads
most recent commit 8 months ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5most recent commit a year ago
Rnaseq Workflow ⭐ 133
A repository for setting up a RNAseq workflow
most recent commit 7 years ago
Tskit ⭐ 131
Population-scale genomics
dependent packages 17total releases 36most recent commit 3 months agopypi tskit} Downloads
Edamontology ⭐ 110
EDAM is an ontology of bioscientific data analysis and data management. EDAM concentrates on topics, operations, types of data, and data formats related to analysis, modelling, optimisation, and data life-cycle in biosciences, and in other research and science-based applications.
most recent commit 7 months ago
Arcs ⭐ 86
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
most recent commit 5 months ago
Czid Web ⭐ 75
Infectious Disease Sequencing Platform
most recent commit 3 months ago
The 5 Most Depended On Science Bioinformatics Open Source Projects
Allensdk ⭐ 314
code for reading and processing Allen Institute for Brain Science data
dependent packages 23total releases 81latest release November 30, 2023most recent commit 5 months agopypi allensdk} Downloads
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Tskit ⭐ 131
Population-scale genomics
dependent packages 17total releases 36latest release October 10, 2023most recent commit 3 months agopypi tskit} Downloads
Qmflows ⭐ 44
This library tackles the construction and efficient execution of computational chemistry workflows
dependent packages 5total releases 9latest release October 06, 2023most recent commit 7 months agopypi qmflows} Downloads
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
The 8 Latest Releases In Science Bioinformatics Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Allensdk ⭐ 314
code for reading and processing Allen Institute for Brain Science data
dependent packages 23total releases 81latest release November 30, 2023most recent commit 5 months agopypi allensdk} Downloads
Tskit ⭐ 131
Population-scale genomics
dependent packages 17total releases 36latest release October 10, 2023most recent commit 3 months agopypi tskit} Downloads
Qmflows ⭐ 44
This library tackles the construction and efficient execution of computational chemistry workflows
dependent packages 5total releases 9latest release October 06, 2023most recent commit 7 months agopypi qmflows} Downloads
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5latest release September 19, 2022most recent commit a year ago
Adapt ⭐ 16
A package for designing activity-informed nucleic acid diagnostics for viruses.
total releases 6latest release June 30, 2022most recent commit a year ago
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