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The Top 23 Bam Open Source Projects

Open source projects categorized as Bam
Categories > Bam
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11most recent commit a month agocargo hts-sys} Downloads
Pytorchinsight ⭐ 678
a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results
most recent commit 3 years ago
Sambamba ⭐ 552
Tools for working with SAM/BAM data
total releases 1most recent commit 8 months ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Biosyntax ⭐ 184
Syntax highlighting for computational biology
most recent commit 3 years ago
Dashbuilder ⭐ 162
Dashboard composition tooling based on the Uberfire framework
dependent packages 12total releases 52most recent commit 3 years ago
Gtz ⭐ 156
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
most recent commit 2 years ago
Win10 ⭐ 149
Win 10/11 related research
most recent commit 4 months ago
Genozip ⭐ 144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
total releases 132most recent commit 3 months ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Learning_bam_file ⭐ 103
Learning the Sequence Alignment/Map format
most recent commit 8 months ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Verifybamid ⭐ 78
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
most recent commit 4 months ago
Dev Standards ⭐ 70
https://bamtech.gitbooks.io/dev-standards/
most recent commit 5 years ago
Simplesam ⭐ 55
Simple pure Python SAM parser and objects for working with SAM records
most recent commit 2 years ago
Alignoth ⭐ 44
Creating alignment plots from bam files
most recent commit 4 months ago
Bamtocov ⭐ 43
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  
most recent commit 2 years ago
Biod ⭐ 43
A D library for computational biology and bioinformatics
total releases 5most recent commit 4 years ago
Hts Nim Tools ⭐ 41
useful command-line tools written to show-case hts-nim
most recent commit 3 years ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44most recent commit 8 months agopypi fuc} Downloads
Bioinf Commons ⭐ 30
Bioinformatics library in Kotlin
most recent commit 3 months ago
Nest Rabbit Tasks ⭐ 27
nest-rabbit-worker is a TaskQueue based upon RabbitMQ for NestJS
dependent packages 2total releases 20most recent commit 3 years agonpm nest-rabbit-tasks} Downloads
Biotoolbox ⭐ 27
Tools for querying and analysis of genomic data
most recent commit 7 months ago
The 5 Most Depended On Bam Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Dashbuilder ⭐ 162
Dashboard composition tooling based on the Uberfire framework
dependent packages 12total releases 52latest release October 10, 2017most recent commit 3 years ago
Nest Rabbit Tasks ⭐ 27
nest-rabbit-worker is a TaskQueue based upon RabbitMQ for NestJS
dependent packages 2total releases 20latest release October 22, 2019most recent commit 3 years agonpm nest-rabbit-tasks} Downloads
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 8 months agopypi fuc} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11latest release June 14, 2023most recent commit a month agocargo hts-sys} Downloads
The 10 Latest Releases In Bam Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 8 months agopypi fuc} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11latest release June 14, 2023most recent commit a month agocargo hts-sys} Downloads
Ruby Htslib ⭐ 7
HTSlib bindings for Ruby
total releases 19latest release May 17, 2023most recent commit 3 months ago
Sambamba ⭐ 552
Tools for working with SAM/BAM data
total releases 1latest release October 05, 2022most recent commit 8 months ago
Additive ⭐ 7
Bindings for Additive TidyModels
total releases 5latest release June 16, 2022most recent commit 3 months ago
Samql ⭐ 20
SQL-like query language for the SAM/BAM file format
latest release May 30, 2021most recent commit 7 months ago
Nest Rabbit Tasks ⭐ 27
nest-rabbit-worker is a TaskQueue based upon RabbitMQ for NestJS
dependent packages 2total releases 20latest release October 22, 2019most recent commit 3 years agonpm nest-rabbit-tasks} Downloads
Biod ⭐ 43
A D library for computational biology and bioinformatics
total releases 5latest release June 01, 2019most recent commit 4 years ago
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