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The Top 23 Alignment Vcf Open Source Projects

Open source projects categorized as Alignment Vcf
Categories > Data Processing > Alignment
Categories > Science > Vcf
Vg ⭐ 1,022
tools for working with genome variation graphs
most recent commit 3 months ago
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Vcf2phylip ⭐ 216
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
most recent commit 10 months ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Vcfdist ⭐ 48
vcfdist: Accurately benchmarking phased variant calls
most recent commit 3 months ago
Snpsplit ⭐ 43
Allele-specific alignment sorting
most recent commit a year ago
Dipcall ⭐ 38
Reference-based variant calling pipeline for a pair of phased haplotype assemblies
most recent commit 3 years ago
Phasedibd ⭐ 35
Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)
most recent commit a year ago
Glia ⭐ 34
a string to graph aligner
most recent commit 8 years ago
Thesis ⭐ 28
my PhD thesis
most recent commit 5 years ago
Marginphase ⭐ 27
most recent commit 4 years ago
Leviosam ⭐ 27
Lift-over alignments from variant-aware references
most recent commit 2 years ago
Vcf2fasta ⭐ 25
Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
most recent commit 4 months ago
Svpv ⭐ 23
Structural Variant Prediction Viewer
most recent commit 7 years ago
Gssplayground ⭐ 21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
most recent commit 4 years ago
Ekidna ⭐ 19
Assembly based core genome SNP alignments for bacteria
most recent commit 5 years ago
Workshop Popgenome ⭐ 19
Tutorial about R package PopGenome
most recent commit 5 years ago
Alignment Nf ⭐ 18
Whole Exome/Whole Genome Sequencing alignment pipeline
most recent commit 3 years ago
Hhga ⭐ 18
haplotypes genotypes and alleles example decision synthesizer
most recent commit 5 years ago
Vargas ⭐ 13
most recent commit 4 years ago
Rpga ⭐ 12
most recent commit 8 years ago
Gsalign ⭐ 9
GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
most recent commit 3 years ago
Vcf2aln ⭐ 8
Script to convert multi-sample VCFs to FASTA alignments
most recent commit a year ago
The 2 Latest Releases In Alignment Vcf Open Source Projects
Cflib ⭐ 6
A library to create and handle counts files used with PoMo.
total releases 6latest release February 11, 2021most recent commit 3 months ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37latest release May 10, 2019most recent commit 3 months ago
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