Genomenlp
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Scispacy | 1,548 |  | 6 | 24 | 8 months ago | 14 | September 30, 2023 | 28 | apache-2.0 | Python |
| A full spaCy pipeline and models for scientific/biomedical documents. | ||||||||||
| Primekg | 269 | 6 months ago | 2 | mit | Jupyter Notebook | |||||
| Precision Medicine Knowledge Graph (PrimeKG) | ||||||||||
| Awesome Bioie | 249 | a year ago | 3 | cc0-1.0 | ||||||
| 🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP) | ||||||||||
| Indra | 154 |  | 6 | 7 | 5 months ago | 29 | May 19, 2020 | 43 | bsd-2-clause | Python |
| INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models. | ||||||||||
| Dna2vec | 103 | 4 years ago | 4 | mit | Python | |||||
| dna2vec: Consistent vector representations of variable-length k-mers | ||||||||||
| Tutorial | 94 | 6 months ago | Jupyter Notebook | |||||||
| Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R) | ||||||||||
| Biochat | 42 | 5 years ago | 8 | mit | Common Lisp | |||||
| Natural language processing of Gene Expression Omnibus data | ||||||||||
| Metasra Pipeline | 42 | 7 months ago | 267 | bsd-3-clause | Python | |||||
| MetaSRA: normalized sample-specific metadata for the Sequence Read Archive | ||||||||||
| Liblevenshtein Java | 40 | 10 | 6 years ago | 4 | May 29, 2016 | 27 | mit | Java | ||
| Various utilities regarding Levenshtein transducers. (Java) | ||||||||||
| Sequence_align | 39 |  | 1 | a year ago | 1 | April 05, 2023 | 2 | apache-2.0 | Python | |
| Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3. | ||||||||||
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