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Search results for natural language processing bioinformatics
bioinformatics
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natural-language-processing
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12 search results found
Scispacy
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1,548
A full spaCy pipeline and models for scientific/biomedical documents.
Primekg
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269
Precision Medicine Knowledge Graph (PrimeKG)
Awesome Bioie
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249
🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
Indra
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154
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Dna2vec
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103
dna2vec: Consistent vector representations of variable-length k-mers
Tutorial
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94
Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)
Biochat
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42
Natural language processing of Gene Expression Omnibus data
Metasra Pipeline
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42
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
Liblevenshtein Java
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40
Various utilities regarding Levenshtein transducers. (Java)
Sequence_align
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39
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
Biot5
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29
BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations (EMNLP 2023)
Biomedical Nlp Corpus
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29
Corpus (datasets) collection about biology and medical NLP.
Biosemble
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17
AI assembly of bioNLP wordnets
Biolitmap
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16
Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.
Adversarial Relation Classification
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16
Unsupervised domain adaptation method for relation extraction
Pkdocclassifier
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14
Binary classifier to identify scientific publications reporting pharmacokinetic parameters estimated in vivo
Gcgc
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8
An ML-feature processing library for biological sequences.
Epigraphdb
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6
Examples on using EpiGraphDB
Ppaxe
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5
Text mining tool to retrieve protein-protein interactions from the scientific literature.
Antibody Watch
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5
Antibody Watch: Text Mining Antibody Specificity from the Literature
Awesome Ai
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5
Awesome list for all things AI, ML and deep learning
Genomenlp
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5
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