Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Hic_tools | 454 | 6 months ago | 1 | mit | ||||||
A collection of tools for Hi-C data analysis | ||||||||||
Sarek | 299 | 5 months ago | 180 | mit | Nextflow | |||||
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing | ||||||||||
Edta | 294 | 5 months ago | 35 | gpl-3.0 | Perl | |||||
Extensive de-novo TE Annotator | ||||||||||
Atac Seq Pipeline | 290 | a year ago | 51 | mit | Python | |||||
ENCODE ATAC-seq pipeline | ||||||||||
Bactopia | 281 | 9 months ago | 67 | mit | Nextflow | |||||
A flexible pipeline for complete analysis of bacterial genomes | ||||||||||
Pgap | 263 | 5 months ago | 15 | other | Common Workflow Language | |||||
NCBI Prokaryotic Genome Annotation Pipeline | ||||||||||
Funannotate | 261 | 7 months ago | 13 | August 10, 2022 | 204 | bsd-2-clause | Python | |||
Eukaryotic Genome Annotation Pipeline | ||||||||||
Pepper | 216 | 8 months ago | 8 | November 19, 2020 | 18 | mit | Python | |||
PEPPER-Margin-DeepVariant | ||||||||||
Chip Seq Pipeline2 | 188 | 2 years ago | 35 | mit | Python | |||||
ENCODE ChIP-seq pipeline | ||||||||||
Vgp Assembly | 160 | a year ago | 1 | other | Shell | |||||
VGP repository for the genome assembly working group |