Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Serratus | 219 | a year ago | 36 | gpl-3.0 | Jupyter Notebook | |||||
Ultra-deep search for novel viruses | ||||||||||
Gatk4 Data Processing | 99 | 2 years ago | 6 | bsd-3-clause | wdl | |||||
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools | ||||||||||
Gatk4 Exome Analysis Pipeline | 37 | 3 years ago | bsd-3-clause | wdl | ||||||
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data. | ||||||||||
Indigo | 29 | 6 months ago | gpl-3.0 | JavaScript | ||||||
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products | ||||||||||
Gnomad Sv Pipeline | 22 | 4 years ago | 4 | mit | R | |||||
Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020) | ||||||||||
Transgener | 6 | a year ago | C++ | |||||||
Transgene integration and rearrangement discovery using NGS |