Taxator Tk
A set of programs for the taxonomic analysis of genetic sequences
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Krakenuniq | 201 | 3 months ago | 107 | gpl-3.0 | C++ | |||||
| 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results | ||||||||||
| Deepecg | 187 | a year ago | mit | Python | ||||||
| ECG classification programs based on ML/DL methods | ||||||||||
| Pyani | 140 |  | 2 | 1 | 2 years ago | 18 | July 27, 2022 | 48 | mit | Python |
| Application and Python module for average nucleotide identity analyses of microbes. | ||||||||||
| Taxprofiler | 78 | 3 months ago | 42 | mit | Nextflow | |||||
| Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data | ||||||||||
| Bonsai | 68 | 9 months ago | 3 | mit | C++ | |||||
| Bonsai: Fast, flexible taxonomic analysis and classification | ||||||||||
| Higitclass | 62 | 8 months ago | 1 | apache-2.0 | Python | |||||
| HiGitClass: Keyword-Driven Hierarchical Classification of GitHub Repositories (ICDM'19) | ||||||||||
| Deepmicrobes | 61 | 2 years ago | 11 | apache-2.0 | Python | |||||
| DeepMicrobes: taxonomic classification for metagenomics with deep learning | ||||||||||
| Woltka | 58 | 4 months ago | 4 | December 26, 2022 | 46 | bsd-3-clause | Python | |||
| Woltka: a versatile meta'omic data classifier | ||||||||||
| Cello | 53 | 10 months ago | 7 | September 28, 2022 | 10 | mit | Jupyter Notebook | |||
| CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology | ||||||||||
| Metacache | 49 | a year ago | 8 | gpl-3.0 | C++ | |||||
| memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping | ||||||||||
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