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35 search results found

Krakenuniq ⭐ 201

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

Deepecg ⭐ 187

ECG classification programs based on ML/DL methods

Application and Python module for average nucleotide identity analyses of microbes.

Taxprofiler ⭐ 78

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Bonsai: Fast, flexible taxonomic analysis and classification

Higitclass ⭐ 62

HiGitClass: Keyword-Driven Hierarchical Classification of GitHub Repositories (ICDM'19)

Deepmicrobes ⭐ 61

DeepMicrobes: taxonomic classification for metagenomics with deep learning

Woltka: a versatile meta'omic data classifier

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Metacache ⭐ 49

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Omicselector ⭐ 26

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

tiara – a tool for DNA sequence classification

Autopvs1 ⭐ 23

An automatic classification tool for PVS1 interpretation of null variants

Treesapp ⭐ 22

A Python package for gene-centric taxonomic and functional classification using phylogenetic placement

Taxpasta ⭐ 21

TAXnomic Profile Aggregation and STAndardisation

GEDFN: Graph-Embedded Deep Feedforward Network

Eltetrado ⭐ 17

A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures

Dna Sequence Classification ⭐ 12

Analysis of DNA Sequence Classification Using Neural Networks - Bioinformatics Course Project - Winter 2022

Dl Based Tumor Classification ⭐ 10

Deep Learning Based Tumor Type Classification Using Gene Expression Data

Pathway Forte ⭐ 10

A Python package for benchmarking pathway database with functional enrichment and classification methods

Taxator Tk ⭐ 8

A set of programs for the taxonomic analysis of genetic sequences

fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing

All Subtype Classification ⭐ 8

A Fast and Efficient CNN Model for B-ALL Diagnosis and its Subtypes Classification using Peripheral Blood Smear Images

Cmeanalysis ⭐ 7

clathrin-mediated endocytosis analysis

Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)

Predictors for Blood-Brain Barrier Permeability with resampling strategies based on B3DB database.

Clinvar Kaggle ⭐ 6

Scripts related to the ClinVar conflicting classifications dataset on Kaggle

Cancertherapy ⭐ 5

To use deep learning to identify patients whose tumor DNA mutations “look similar to” other tumors for which treatments are effective.

Stringmeup ⭐ 5

A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.

Nf Repeatmasking ⭐ 5

Nextflow workflow for automatic repeat detection, classification and masking

Spollineages ⭐ 5

Rapid and precise prediction of Mycobacterium tuberculosis complex families

Classification of Single cells by Transfer Learning

Pipelines ⭐ 5

Conveyor-based analysis pipelines for metagenome data

Plasmidpicker ⭐ 5

Software to identify plasmid sequence data from metagenome using logistic regression and Minhash

Retrieve annotated intron sequences and classify them as minor (U12-type) or major (U2-type) using a support vector-machine model.

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