Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Fastp | 1,602 | 7 months ago | 1 | December 15, 2021 | 309 | mit | C++ | |||
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) | ||||||||||
Cutadapt | 475 | 64 | 24 | 4 months ago | 64 | December 06, 2023 | 59 | mit | Python | |
Cutadapt removes adapter sequences from sequencing reads | ||||||||||
Atropos | 116 | 5 months ago | 25 | other | Python | |||||
An NGS read trimming tool that is specific, sensitive, and speedy. (production) | ||||||||||
Nightingale | 102 | 11 | 21 | 9 months ago | 42 | December 01, 2022 | 11 | mit | TypeScript | |
Data visualisation web components for the life sciences. | ||||||||||
Migec | 40 | a year ago | 28 | other | Groovy | |||||
A RepSeq processing swiss-knife | ||||||||||
Bipy | 14 | 8 years ago | mit | Python | ||||||
DEPRECATED Lightweight bioinformatics pipeline tools using iPython | ||||||||||
Umitools | 9 | 6 years ago | other | Python | ||||||
A toolset for handling sequencing data with unique molecular identifiers (UMIs) | ||||||||||
Pori_graphkb_python | 7 | 2 | 6 months ago | 21 | December 04, 2023 | 2 | gpl-3.0 | Python | ||
Python adapter package for querying the GraphKB API | ||||||||||
Canine | 6 | 4 months ago | 14 | bsd-3-clause | Python | |||||
A modular, high-performance computing solution to run jobs using SLURM | ||||||||||
Pori_ipr_python | 5 | 5 months ago | gpl-3.0 | Python | ||||||
Python adapter for generating reports uploaded to IPR using the PORI platform |