Sativa
Semi-Automatic Taxonomy Improvement and Validation Algorithm
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Block Aligner | 111 | 10 months ago | 10 | August 05, 2023 | 7 | mit | Jupyter Notebook | |||
| SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm. | ||||||||||
| Famsa | 101 | 2 years ago | 3 | gpl-3.0 | C | |||||
| Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM) | ||||||||||
| Kmer Db | 68 | a year ago | 4 | gpl-3.0 | C++ | |||||
| Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.). | ||||||||||
| Cute Nucleotides | 53 | 4 years ago | mit | Rust | ||||||
| Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust. | ||||||||||
| Opal | 24 | 2 years ago | 20 | mit | C++ | |||||
| SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global) | ||||||||||
| Sativa | 14 | 6 months ago | 3 | gpl-3.0 | Python | |||||
| Semi-Automatic Taxonomy Improvement and Validation Algorithm | ||||||||||
| Libflagstats | 11 | 5 years ago | 5 | November 08, 2019 | apache-2.0 | C | ||||
| Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets. | ||||||||||
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