Invivo Imaging Alternatives

Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)
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Alternatives To adamcohenlab/invivo-imaging
Project Name Stars Downloads Repos Using This Packages Using This Most Recent Commit Total Releases Latest Release Open Issues License Language
JunshengFu/vehicle-detection 509 0 0 about 4 years ago 0 20 gpl-3.0 Python
Created vehicle detection pipeline with two approaches: (1) deep neural networks (YOLO framework) and (2) support vector machines ( OpenCV + HOG).
nf-core/spatialtranscriptomics 34 0 0 over 2 years ago 0 7 mit Nextflow
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
bingrao/vehicle-detection 16 0 0 over 8 years ago 0 0 other Python
Record the speed of cars passing in front of the Raspberry Pi Picamera. Created vehicle detection pipeline with two approaches: (1) deep neural networks (YOLO framework) and (2) support vector machines ( OpenCV + HOG).
adamcohenlab/invivo-imaging 12 0 0 about 3 years ago 0 0 Jupyter Notebook
Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)
HARMONI-ELT/HSIM 8 0 0 over 2 years ago 0 0 bsd-3-clause Python
HSIM: HARMONI simulation pipeline
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Tract based spatial statistics using ANTs and FSL
jfnavarro/st_pipeline 6 0 0 about 5 years ago 26 January 22, 2026 0 other Python
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
mraad/SpatialCrunch 6 0 0 about 13 years ago 0 0 Java
Crunch pipeline to perform a spatial join between a very large set of static points and a small set of dynamic polygons.
KnowlesLab/X-ORGIN 5 0 0 almost 5 years ago 0 0 gpl-3.0 R
XOrigin is a pipeline to estimate expansion origins from derived SNPs, which incorporate temporal and spatial heterogeneity. It is best suited for estimating refugia for species that experienced distributional shifts during last glacial maximum. The pipeline is dependent on SPLATCHE2 for spatially-explicit demographic simulations, and make use of the spatial statistics Psi to estimate expansion origins.
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