Darrc
DARRC is a new alignment-free and reference-free compression method that addresses the problem of pan-genome compression by encoding the sequences of a pan-genome as a guided de Bruijn Graph. The novelty of this method is its ability to incrementally update DARRC archives with new genome sequences without full decompression of the archive. DARRC can compress both single-end and paired-end read sequences of any length using all symbols of the IUPAC nucleotide code.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Khaper | 15 | 2 years ago | 2 | Perl | ||||||
| Hirgc | 9 | 4 years ago | 1 | C++ | ||||||
| High-speed and high-ratio referential genome compression | ||||||||||
| Darrc | 7 | 7 years ago | mit | C | ||||||
| DARRC is a new alignment-free and reference-free compression method that addresses the problem of pan-genome compression by encoding the sequences of a pan-genome as a guided de Bruijn Graph. The novelty of this method is its ability to incrementally update DARRC archives with new genome sequences without full decompression of the archive. DARRC can compress both single-end and paired-end read sequences of any length using all symbols of the IUPAC nucleotide code. | ||||||||||
| Nascent | 6 | a year ago | 27 | mit | Nextflow | |||||
| Nascent Transcription Processing Pipeline | ||||||||||
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Compression
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