Appian
APPIAN is an open-source automated software pipeline for analyzing PET images in conjunction with MRI. The goal of APPIAN is to make PET tracer kinetic data analysis easy for users with moderate computing skills and to facilitate reproducible research.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Nextflow | 2,447 | 16 | 5 months ago | 250 | November 24, 2023 | 336 | apache-2.0 | Groovy | ||
| A DSL for data-driven computational pipelines | ||||||||||
| Drake | 1,329 | 15 | 1 | a month ago | 47 | November 06, 2023 | gpl-3.0 | R | ||
| An R-focused pipeline toolkit for reproducibility and high-performance computing | ||||||||||
| Targets | 860 | 2 months ago | other | R | ||||||
| Function-oriented Make-like declarative workflows for R | ||||||||||
| Sarek | 299 | 5 months ago | 180 | mit | Nextflow | |||||
| Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing | ||||||||||
| Sunbeam | 157 | 5 months ago | 14 | HTML | ||||||
| A robust, extensible metagenomics pipeline | ||||||||||
| Steppy | 134 | 5 | 6 years ago | 16 | November 23, 2018 | 16 | mit | Python | ||
| Lightweight, Python library for fast and reproducible experimentation :microscope: | ||||||||||
| Seq2science | 132 | 7 months ago | 18 | mit | Python | |||||
| Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data. | ||||||||||
| Sarek | 126 | 4 years ago | n,ull | mit | Nextflow | |||||
| Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing | ||||||||||
| Targets Tutorial | 90 | 7 months ago | other | R | ||||||
| Short course on the targets R package | ||||||||||
| Bacannot | 85 | 7 months ago | 10 | gpl-3.0 | Nextflow | |||||
| Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app. | ||||||||||
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