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The Top 1,054 Neuroscience Open Source Projects

Categories > Science > Neuroscience
Nupic ⭐ 6,188
Numenta Platform for Intelligent Computing is an implementation of Hierarchical Temporal Memory (HTM), a theory of intelligence based strictly on the neuroscience of the neocortex.
total releases 53most recent commit 2 years ago
Course Content ⭐ 2,230
NMA Computational Neuroscience course
most recent commit 2 days ago
Mne Python ⭐ 1,968
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
dependent packages 114total releases 62most recent commit 3 hours agopypi mne} Downloads
Psychopy ⭐ 1,255
For running psychology and neuroscience experiments
total releases 30most recent commit 8 hours ago
Awesome Neuroscience ⭐ 892
A curated list of awesome neuroscience libraries, software and any content related to the domain.
most recent commit a month ago
Nengo ⭐ 698
A Python library for creating and simulating large-scale brain models
dependent packages 11total releases 19most recent commit 2 months agopypi nengo} Downloads
Brian2 ⭐ 675
Brian is a free, open source simulator for spiking neural networks.
dependent packages 13total releases 42most recent commit 12 days agopypi Brian2} Downloads
Fieldtrip ⭐ 635
The MATLAB toolbox for MEG, EEG and iEEG analysis
most recent commit 5 hours ago
Brainflow ⭐ 626
BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors
dependent packages 8total releases 84most recent commit 24 days agopypi brainflow} Downloads
Dcm2niix ⭐ 478
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
dependent packages 1total releases 10most recent commit 3 months ago
Csinva.github.io ⭐ 416
Slides, paper notes, class notes, blog posts, and research on ML 📉, statistics 📊, and AI 🤖.
most recent commit 7 days ago
Pyriemann ⭐ 388
Python package for covariance matrices manipulation and Biosignal classification with application in Brain Computer interface
dependent packages 5total releases 8most recent commit 7 days agopypi pyriemann} Downloads
Mathtoolsforneuroscience ⭐ 362
Materials for Mathematical Tools for Neuroscience course at Harvard (Neurobio 212)
most recent commit 8 months ago
Eyeloop ⭐ 362
EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.
most recent commit 6 months ago
Brainrender ⭐ 357
a python based software for visualization of neuroanatomical and morphological data.
dependent packages 4total releases 76most recent commit a month agopypi brainrender} Downloads
Moabb ⭐ 337
Mother of All BCI Benchmarks
dependent packages 1total releases 8most recent commit a month agopypi moabb} Downloads
Open Computational Neuroscience Resources ⭐ 313
A publicly-editable collection of open computational neuroscience resources
most recent commit 4 months ago
Neurolib ⭐ 287
Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬
total releases 25most recent commit 15 days ago
Pyphi ⭐ 283
A toolbox for integrated information theory.
dependent packages 2total releases 24most recent commit 4 months agopypi pyphi} Downloads
Snntorch ⭐ 272
Deep and online learning with spiking neural networks in Python
total releases 34most recent commit 16 days ago
Brainiak ⭐ 271
Brain Imaging Analysis Kit
total releases 15most recent commit 3 months ago
Brayns ⭐ 256
Visualizer for large-scale and interactive ray-tracing of neurons
dependent packages 1total releases 9most recent commit 3 months agopypi brayns} Downloads
Neurodocker ⭐ 254
Generate custom Docker and Singularity images, and minimize existing containers
dependent packages 2total releases 10most recent commit 2 months agopypi neurodocker} Downloads
Neurokit.py ⭐ 253
A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).
dependent packages 1total releases 6most recent commit 2 years agopypi neurokit} Downloads
Neurotech Course ⭐ 240
CS198-96: Intro to Neurotechnology @ UC Berkeley
most recent commit 3 months ago
Kilosort ⭐ 237
Fast spike sorting with drift correction for up to a thousand channels
most recent commit 4 months ago
Nrn ⭐ 234
NEURON Simulator
dependent packages 6total releases 22most recent commit 8 hours agopypi NEURON} Downloads
Fooof ⭐ 231
Parameterizing neural power spectra into periodic & aperiodic components.
total releases 8most recent commit 6 days ago
Suite2p ⭐ 226
cell detection in calcium imaging recordings
total releases 79most recent commit 8 days ago
Brainpy ⭐ 211
Brain Dynamics Programming in Python
total releases 29most recent commit 15 days ago
Bmtk ⭐ 210
Brain Modeling Toolkit
dependent packages 1total releases 10most recent commit 14 days agopypi bmtk} Downloads
Nupic.torch ⭐ 207
Numenta Platform for Intelligent Computing PyTorch libraries
most recent commit a month ago
Nitime ⭐ 199
Timeseries analysis for neuroscience data
most recent commit 9 months ago
Erplab ⭐ 196
ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.
most recent commit 2 months ago
Eeg Notebooks ⭐ 195
A collection of classic EEG experiments implemented with Python and Jupyter notebooks
most recent commit 13 days ago
Opensesame ⭐ 195
Graphical experiment builder for the social sciences
total releases 9most recent commit a month ago
Org.geppetto ⭐ 184
Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.
most recent commit 2 years ago
Ed4 ⭐ 184
Computational Cognitive Neuroscience, Fourth Edition
most recent commit 5 months ago
Dvid ⭐ 177
Distributed, Versioned, Image-oriented Dataservice
total releases 49most recent commit 19 days ago
Bluepyopt ⭐ 172
Blue Brain Python Optimisation Library
dependent packages 2total releases 347most recent commit 10 hours agopypi bluepyopt} Downloads
Awesome Computational Neuroscience ⭐ 166
A list of schools and researchers in computational neuroscience
most recent commit 2 years ago
Tapas ⭐ 159
TAPAS - Translational Algorithms for Psychiatry-Advancing Science
most recent commit 2 months ago
Catmaid ⭐ 154
Collaborative Annotation Toolkit for Massive Amounts of Image Data
most recent commit 5 days ago
Neurosummerschools ⭐ 150
List of summer schools in neuroscience and related fields
most recent commit 3 years ago
Neurogym ⭐ 150
A curated collection of neuroscience tasks with a common interface.
most recent commit 2 months ago
Eegrunt ⭐ 147
A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse
most recent commit 5 years ago
Clinica ⭐ 143
Software platform for clinical neuroimaging studies
most recent commit 4 days ago
Visbrain ⭐ 143
A multi-purpose GPU-accelerated open-source suite for brain data visualization
dependent packages 2total releases 17most recent commit 2 years agopypi visbrain} Downloads
Deepeeg ⭐ 136
Deep Learning with Tensor Flow for EEG MNE Epoch Objects
most recent commit 5 months ago
Euclidean Distance Transform 3d ⭐ 132
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
dependent packages 8total releases 33most recent commit 2 months agopypi edt} Downloads
Regularized Linear Autoencoders ⭐ 132
Loss Landscapes of Regularized Linear Autoencoders
most recent commit a month ago
Uncertainpy ⭐ 131
Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis, tailored towards computational neuroscience.
total releases 13most recent commit a year ago
Elephant ⭐ 129
Elephant is the Electrophysiology Analysis Toolkit
most recent commit a day ago
Pynwb ⭐ 127
A Python API for working with Neurodata stored in the NWB Format
dependent packages 56total releases 29most recent commit 5 days agopypi pynwb} Downloads
Mne Cpp ⭐ 126
MNE-CPP: A Framework for Electrophysiology
most recent commit a month ago
Analyzing_neural_time_series ⭐ 124
python implementations of Analyzing Neural Time Series Textbook
most recent commit 8 months ago
Cellfinder ⭐ 121
Automated 3D cell detection and registration of whole-brain images
total releases 87most recent commit a month ago
Workbench ⭐ 120
Connectome Workbench
most recent commit 18 days ago
Spikeinterface ⭐ 119
A Python-based module for creating flexible and robust spike sorting pipelines.
dependent packages 5total releases 31most recent commit 3 hours agopypi spikeinterface} Downloads
Pytorch_connectomics ⭐ 113
PyTorch Connectomics: segmentation toolbox for EM connectomics
most recent commit a day ago
Nsci801 Quantneuro ⭐ 112
NSCI 801 (Queen's U) Quantitative Neuroscience course materials
most recent commit 2 months ago
Canlabcore ⭐ 110
Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.
most recent commit 22 days ago
Psycho.r ⭐ 110
An R package for experimental psychologists
dependent packages 4total releases 17most recent commit a year ago
Epfl ⭐ 108
EPFL summaries & cheatsheets over 5 years (computer science, communication systems, data science and computational neuroscience).
most recent commit 9 months ago
Machine_learning_and_neuroscience ⭐ 106
This is the code for "Machine Learning & Neuroscience" By Siraj Raval on Youtube
most recent commit 4 years ago
Coreneuron ⭐ 105
Simulator optimized for large scale neural network simulations.
most recent commit 4 days ago
Recursos Neuro ⭐ 104
Repositorio con recursos de Neurociencia Cognitiva y computacional con amplitud temática.
most recent commit 2 months ago
Antropy ⭐ 104
AntroPy: entropy and complexity of (EEG) time-series in Python
most recent commit a month ago
Dcm2bids ⭐ 103
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
total releases 19most recent commit 18 days ago
Nn Brain ⭐ 102
Tutorial codes for modeling brains with neural nets
most recent commit a year ago
Expyriment ⭐ 100
Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments
most recent commit 6 days ago
Twpca ⭐ 98
🕝 Time-warped principal components analysis (twPCA)
total releases 2most recent commit a year ago
B Soid ⭐ 97
Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
most recent commit a year ago
Vame ⭐ 96
Variational Animal Motion Embedding - A tool for time series embedding and clustering
most recent commit 14 days ago
Python Meegkit ⭐ 94
🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python 🧠🔧
most recent commit 5 days ago
Braingraph ⭐ 94
Graph theory analysis of brain MRI data
dependent packages 1total releases 11most recent commit a year ago
Wave_clus ⭐ 93
A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering
most recent commit a month ago
Neuropythy ⭐ 91
A neuroscience library for Python, intended to complement the existing nibabel library.
dependent packages 1total releases 111most recent commit 18 days agopypi neuropythy} Downloads
Cochlea ⭐ 91
Inner ear models for Python
total releases 5most recent commit 4 months ago
Mne Bids ⭐ 86
MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.
dependent packages 7total releases 11most recent commit 2 days agopypi mne-bids} Downloads
Tnn ⭐ 84
Biologically-realistic recurrent convolutional neural networks
most recent commit a year ago
Miniscope V4 ⭐ 83
All things Miniscope v4
most recent commit 18 days ago
Nupic.research ⭐ 82
Experimental algorithms. Unsupported.
most recent commit a month ago
Openbci Dashboard ⭐ 80
A fullstack javascript app for capturing and visualizing OpenBCI EEG data
most recent commit 4 years ago
Facemap ⭐ 80
matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)
total releases 15most recent commit 3 months ago
Cleanbib ⭐ 78
Probabilistically assign gender and race proportions of first/last authors pairs in bibliography entries
most recent commit 6 months ago
Nengo Gui ⭐ 77
Nengo interactive visualizer
total releases 19most recent commit a month ago
Arbor ⭐ 76
The Arbor multi-compartment neural network simulation library.
total releases 6most recent commit a day ago
Mne Bids Pipeline ⭐ 75
Automatically process entire electrophysiological datasets using MNE-Python.
most recent commit 13 days ago
Sims ⭐ 74
simulations for the Computational Cognitive Neuroscience textbook
total releases 10most recent commit 4 months ago
Pyabf ⭐ 73
pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
dependent packages 3total releases 62most recent commit 9 days agopypi pyabf} Downloads
Artificial Intelligence And Machine Learning ⭐ 72
A repository for implementation of artificial intelligence algorithm which includes machine learning and deep learning algorithm as well as classical AI search algorithm
most recent commit a year ago
Nengo Dl ⭐ 71
Deep learning integration for Nengo
dependent packages 3total releases 30most recent commit 2 months agopypi nengo-dl} Downloads
Kfs ⭐ 69
Keras for Science
most recent commit 4 years ago
Ucla Course Notes ⭐ 68
My notes from the classes I've taken at UCLA
most recent commit 3 years ago
Labhacks ⭐ 68
Resources for data driven neuroscientists.
most recent commit 3 months ago
Awesome Neuro Ai Papers ⭐ 68
Papers from the intersection of deep learning and neuroscience
most recent commit 4 months ago
Mi Eeg 1d Cnn ⭐ 67
A new approach based on a 10-layer one-dimensional convolution neural network (1D-CNN) to classify five brain states (four MI classes plus a 'baseline' class) using a data augmentation algorithm and a limited number of EEG channels. Paper: https://doi.org/10.1088/1741-2552/ac4430
most recent commit a month ago
Psyneulink ⭐ 67
A block modeling system for cognitive neuroscience
dependent packages 2total releases 84most recent commit 3 months agopypi psyneulink} Downloads
Rastermap ⭐ 67
A multi-dimensional embedding algorithm
total releases 14most recent commit a year ago
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