The Top 64 Neuroscience Open Source Projects

Awesome Open Source

Awesome Open Source

Combined Topics

Advertising 📦 10

Application Programming Interfaces 📦 124

Applications 📦 192

Artificial Intelligence 📦 78

Blockchain 📦 73

Build Tools 📦 113

Cloud Computing 📦 80

Code Quality 📦 28

Collaboration 📦 32

Command Line Interface 📦 49

Community 📦 83

Companies 📦 60

Compilers 📦 63

Computer Science 📦 80

Configuration Management 📦 42

Content Management 📦 175

Control Flow 📦 213

Data Formats 📦 78

Data Processing 📦 276

Data Storage 📦 135

Economics 📦 64

Frameworks 📦 215

Graphics 📦 110

Hardware 📦 152

Integrated Development Environments 📦 49

Learning Resources 📦 166

Libraries 📦 129

Lists Of Projects 📦 22

Machine Learning 📦 347

Mapping 📦 64

Marketing 📦 15

Mathematics 📦 55

Messaging 📦 98

Networking 📦 315

Operating Systems 📦 89

Operations 📦 121

Package Managers 📦 55

Programming Languages 📦 245

Runtime Environments 📦 100

Science 📦 42

Security 📦 396

Social Media 📦 27

Software Architecture 📦 72

Software Development 📦 72

Software Performance 📦 58

Software Quality 📦 133

Text Editors 📦 49

Text Processing 📦 136

User Interface 📦 330

User Interface Components 📦 514

Version Control 📦 30

Virtualization 📦 71

Web Browsers 📦 42

Web Servers 📦 26

Web User Interface 📦 210

The Top 64 Neuroscience Open Source Projects

Categories > Science > Neuroscience

Mne Python ⭐ 1,588

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

Psychopy ⭐ 1,038

For running psychology and neuroscience experiments

Awesome Neuroscience ⭐ 759

A curated list of awesome neuroscience libraries, software and any content related to the domain.

A Python library for creating and simulating large-scale brain models

Brian is a free, open source simulator for spiking neural networks.

Fieldtrip ⭐ 497

The MATLAB toolbox for MEG, EEG and iEEG analysis

Dcm2niix ⭐ 376

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Csinva.github.io ⭐ 360

Slides, paper notes, class notes, blog posts, and research on ML 📉, statistics 📊, and AI 🤖.

Eyeloop ⭐ 341

EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.

Neurokit.py ⭐ 300

A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).

Pyriemann ⭐ 282

Python package for covariance matrices manipulation and Biosignal classification with application in Brain Computer interface

A toolbox for integrated information theory.

Open Computational Neuroscience Resources ⭐ 255

A publicly-editable collection of open computational neuroscience resources

Awesome Computational Neuroscience ⭐ 255

A list of schools and researchers in computational neuroscience

Brainiak ⭐ 242

Brain Imaging Analysis Kit

Visualizer for large-scale and interactive ray-tracing of neurons

Mother of All BCI Benchmarks

Neurodocker ⭐ 210

Generate custom Docker and Singularity images, and minimize existing containers

Neurotech Course ⭐ 207

CS198-96: Intro to Neurotechnology @ UC Berkeley

Neurolib ⭐ 197

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

Brainrender ⭐ 194

a python based software for visualization of neuroanatomical and morphological data.

Brainflow ⭐ 188

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

Brain Modeling Toolkit

Opensesame ⭐ 177

Graphical experiment builder for the social sciences

Distributed, Versioned, Image-oriented Dataservice

Visbrain ⭐ 175

A multi-purpose GPU-accelerated open-source suite for brain data visualization

ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.

Eegrunt ⭐ 173

A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse

Parameterizing neural power spectra into periodic & aperiodic components.

Suite2p ⭐ 160

cell detection in calcium imaging recordings

Kilosort ⭐ 156

Fast spike sorting with drift correction for up to a thousand channels

NEURON Simulator

Bluepyopt ⭐ 150

Blue Brain Python Optimisation Library

Entropy ⭐ 143

EntroPy: complexity of time-series in Python (DEPRECATED)

TAPAS - Translational Algorithms for Psychiatry-Advancing Science

Catmaid ⭐ 127

Collaborative Annotation Toolkit for Massive Amounts of Image Data

Uncertainpy ⭐ 127

Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis, tailored towards computational neuroscience.

Analyzing_neural_time_series ⭐ 120

python implementations of Analyzing Neural Time Series Textbook

Psycho.r ⭐ 115

An R package for experimental psychologists

Mne Cpp ⭐ 110

MNE-CPP: A Framework for Electrophysiology

Spikeextractors ⭐ 110

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

Deepeeg ⭐ 108

Deep Learning with Tensor Flow for EEG MNE Epoch Objects

Workbench ⭐ 97

Connectome Workbench

Expyriment ⭐ 95

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

EPFL summaries & cheatsheets over 5 years (computer science, communication systems, data science and computational neuroscience).

Canlabcore ⭐ 90

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.

Inner ear models for Python

Openbci Dashboard ⭐ 83

A fullstack javascript app for capturing and visualizing OpenBCI EEG data

Biologically-realistic recurrent convolutional neural networks

Nengo Gui ⭐ 69

Nengo interactive visualizer

Rastermap ⭐ 66

A multi-dimensional embedding algorithm

Open Science Resources ⭐ 63

A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.

A Python interface for ABF files

Spyking Circus ⭐ 55

Fast and scalable spike sorting in python

Pytorch_connectomics ⭐ 48

PyTorch Connectomics: segmentation toolbox for EM connectomics

Temporal Network Tools

Real-time position tracker for behavioral research

Pymuscle ⭐ 42

A motor unit based model of skeletal muscle and fatigue

The Tensorflow code and a DeepMind Lab wrapper for my article "Meta-Reinforcement Learning" on FloydHub.

Neuromatch Academy ⭐ 30

Preparatory Materials, Self-guided Learning, and Project Management for Neuromatch Academy activities

ONI-compatible hardware, firmware, and host APIs for advanced neuroscience experiments.

Train PyTorch Models using the Genetic Algorithm with PyGAD

Amap Python ⭐ 20

Automated mouse atlas propagation

Osb_documentation ⭐ 11

Source repository for documentation at Open Source Brain

1-64 of 64 projects

Advertising 📦 10

Application Programming Interfaces 📦 124

Applications 📦 192

Artificial Intelligence 📦 78

Blockchain 📦 73

Build Tools 📦 113

Cloud Computing 📦 80

Code Quality 📦 28

Collaboration 📦 32

Command Line Interface 📦 49

Community 📦 83

Companies 📦 60

Compilers 📦 63

Computer Science 📦 80

Configuration Management 📦 42

Content Management 📦 175

Control Flow 📦 213

Data Formats 📦 78

Data Processing 📦 276

Data Storage 📦 135

Economics 📦 64

Frameworks 📦 215

Graphics 📦 110

Hardware 📦 152

Integrated Development Environments 📦 49

Learning Resources 📦 166

Libraries 📦 129

Lists Of Projects 📦 22

Machine Learning 📦 347

Mapping 📦 64

Marketing 📦 15

Mathematics 📦 55

Messaging 📦 98

Networking 📦 315

Operating Systems 📦 89

Operations 📦 121

Package Managers 📦 55

Programming Languages 📦 245

Runtime Environments 📦 100

Science 📦 42

Security 📦 396

Social Media 📦 27

Software Architecture 📦 72

Software Development 📦 72

Software Performance 📦 58

Software Quality 📦 133

Text Editors 📦 49

Text Processing 📦 136

User Interface 📦 330

User Interface Components 📦 514

Version Control 📦 30

Virtualization 📦 71

Web Browsers 📦 42

Web Servers 📦 26

Web User Interface 📦 210