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The Top 62 Neuroscience Open Source Projects
Categories
>
Science
>
Neuroscience
Mne Python
⭐
1,517
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
Psychopy
⭐
1,006
For running psychology and neuroscience experiments
Awesome Neuroscience
⭐
720
A curated list of awesome neuroscience libraries, software and any content related to the domain.
Nengo
⭐
605
A Python library for creating and simulating large-scale brain models
Brian2
⭐
531
Brian is a free, open source simulator for spiking neural networks.
Fieldtrip
⭐
473
The MATLAB toolbox for MEG, EEG and iEEG analysis
Dcm2niix
⭐
358
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
Csinva.github.io
⭐
338
Slides, paper notes, class notes, blog posts, and research on ML 📉, statistics 📊, and AI 🤖.
Eyeloop
⭐
334
EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.
Neurokit.py
⭐
286
A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).
Pyriemann
⭐
269
Python package for covariance matrices manipulation and Biosignal classification with application in Brain Computer interface
Pyphi
⭐
243
A toolbox for integrated information theory.
Brainiak
⭐
230
Brain Imaging Analysis Kit
Brayns
⭐
229
Visualizer for large-scale and interactive ray-tracing of neurons
Open Computational Neuroscience Resources
⭐
227
A publicly-editable collection of open computational neuroscience resources
Awesome Computational Neuroscience
⭐
220
A list of schools and researchers in computational neuroscience
Moabb
⭐
210
Mother of All BCI Benchmarks
Neurotech Course
⭐
200
CS198-96: Intro to Neurotechnology @ UC Berkeley
Neurodocker
⭐
194
Generate custom Docker and Singularity images, and minimize existing containers
Brainrender
⭐
178
a python based software for visualization of neuroanatomical and morphological data.
Neurolib
⭐
176
Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿🔬
Dvid
⭐
173
Distributed, Versioned, Image-oriented Dataservice
Bmtk
⭐
173
Brain Modeling Toolkit
Opensesame
⭐
172
Graphical experiment builder for the social sciences
Visbrain
⭐
171
A multi-purpose GPU-accelerated open-source suite for brain data visualization
Eegrunt
⭐
168
A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse
Erplab
⭐
165
ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.
Fooof
⭐
155
Parameterizing neural power spectra into periodic & aperiodic components.
Brainflow
⭐
155
BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors
Suite2p
⭐
149
cell detection in calcium imaging recordings
Kilosort
⭐
147
Fast spike sorting with drift correction for up to a thousand channels
Bluepyopt
⭐
139
Blue Brain Python Optimisation Library
Nrn
⭐
136
NEURON Simulator
Entropy
⭐
133
EntroPy: complexity of (EEG) time-series in Python
Catmaid
⭐
125
Collaborative Annotation Toolkit for Massive Amounts of Image Data
Uncertainpy
⭐
122
Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis, tailored towards computational neuroscience.
Tapas
⭐
118
TAPAS - Translational Algorithms for Psychiatry-Advancing Science
Analyzing_neural_time_series
⭐
114
python implementations of Analyzing Neural Time Series Textbook
Psycho.r
⭐
112
An R package for experimental psychologists
Spikeextractors
⭐
107
Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.
Mne Cpp
⭐
102
MNE-CPP: A Framework for Electrophysiology
Deepeeg
⭐
98
Deep Learning with Tensor Flow for EEG MNE Epoch Objects
Workbench
⭐
95
Connectome Workbench
Expyriment
⭐
94
Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments
Epfl
⭐
90
EPFL summaries & cheatsheets over 5 years (computer science, communication systems, data science and computational neuroscience).
Canlabcore
⭐
88
Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.
Cochlea
⭐
82
Inner ear models for Python
Openbci Dashboard
⭐
82
A fullstack javascript app for capturing and visualizing OpenBCI EEG data
Tnn
⭐
82
Biologically-realistic recurrent convolutional neural networks
Nengo Gui
⭐
65
Nengo interactive visualizer
Open Science Resources
⭐
58
A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.
Pyabf
⭐
57
A Python interface for ABF files
Spyking Circus
⭐
55
Fast and scalable spike sorting in python
Rastermap
⭐
54
A multi-dimensional embedding algorithm
Oat
⭐
45
Real-time position tracker for behavioral research
Teneto
⭐
43
Temporal Network Tools
Pytorch_connectomics
⭐
43
PyTorch Connectomics: segmentation toolbox for EM connectomics
Pymuscle
⭐
38
A motor unit based model of skeletal muscle and fatigue
Meta_rl
⭐
36
The Tensorflow code and a DeepMind Lab wrapper for my article "Meta-Reinforcement Learning" on FloydHub.
Neuromatch Academy
⭐
30
Preparatory Materials, Self-guided Learning, and Project Management for Neuromatch Academy activities
Onix
⭐
20
ONI-compatible hardware, firmware, and host APIs for advanced neuroscience experiments.
Amap Python
⭐
20
Automated mouse atlas propagation
1-62 of 62 projects
Advertising
📦 10
All Projects
Application Programming Interfaces
📦 124
Applications
📦 192
Artificial Intelligence
📦 78
Blockchain
📦 73
Build Tools
📦 113
Cloud Computing
📦 80
Code Quality
📦 28
Collaboration
📦 32
Command Line Interface
📦 49
Community
📦 83
Companies
📦 60
Compilers
📦 63
Computer Science
📦 80
Configuration Management
📦 42
Content Management
📦 175
Control Flow
📦 213
Data Formats
📦 78
Data Processing
📦 276
Data Storage
📦 135
Economics
📦 64
Frameworks
📦 215
Games
📦 129
Graphics
📦 110
Hardware
📦 152
Integrated Development Environments
📦 49
Learning Resources
📦 166
Legal
📦 29
Libraries
📦 129
Lists Of Projects
📦 22
Machine Learning
📦 347
Mapping
📦 64
Marketing
📦 15
Mathematics
📦 55
Media
📦 239
Messaging
📦 98
Networking
📦 315
Operating Systems
📦 89
Operations
📦 121
Package Managers
📦 55
Programming Languages
📦 245
Runtime Environments
📦 100
Science
📦 42
Security
📦 396
Social Media
📦 27
Software Architecture
📦 72
Software Development
📦 72
Software Performance
📦 58
Software Quality
📦 133
Text Editors
📦 49
Text Processing
📦 136
User Interface
📦 330
User Interface Components
📦 514
Version Control
📦 30
Virtualization
📦 71
Web Browsers
📦 42
Web Servers
📦 26
Web User Interface
📦 210
