The Top 23 Neuroimaging Open Source Projects

Open source projects categorized as Neuroimaging

Categories > Machine Learning > Neuroimaging

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Mne Python ⭐ 2,449

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

dependent packages 187total releases 76most recent commit 3 months ago

Slicer ⭐ 1,339

Multi-platform, free open source software for visualization and image computing.

most recent commit 3 months ago

Dltk ⭐ 1,293

Deep Learning Toolkit for Medical Image Analysis

most recent commit 2 years ago

Ants ⭐ 1,107

Advanced Normalization Tools (ANTs)

most recent commit a month ago

Nilearn ⭐ 1,076

Machine learning for NeuroImaging in Python

most recent commit 3 months ago

Awesome Neuroscience ⭐ 974

A curated list of awesome neuroscience libraries, software and any content related to the domain.

most recent commit a year ago

Slicergitsvnarchive ⭐ 883

Multi-platform, free open source software for visualization and image computing.

most recent commit 4 years ago

Fieldtrip ⭐ 782

The MATLAB toolbox for MEG, EEG and iEEG analysis

most recent commit 3 months ago

Dcm2niix ⭐ 746

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

dependent packages 2total releases 2most recent commit 4 months ago

Nipype ⭐ 707

Workflows and interfaces for neuroimaging packages

total releases 11most recent commit 5 months ago

Dipy ⭐ 647

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

most recent commit 3 months ago

Braindecode ⭐ 638

Deep learning software to decode EEG, ECG or MEG signals

dependent packages 3total releases 49most recent commit 4 months ago

Fmriprep ⭐ 599

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

dependent packages 1total releases 178most recent commit 25 days ago

Nibabel ⭐ 598

Python package to access a cacophony of neuro-imaging file formats

dependent packages 556total releases 40most recent commit 4 months ago

Pycortex ⭐ 534

Pycortex is a python-based toolkit for surface visualization of fMRI data

dependent packages 1total releases 14most recent commit 5 months ago

Freesurfer ⭐ 509

Neuroimaging analysis and visualization suite

most recent commit 3 months ago

Nipy ⭐ 361

Neuroimaging in Python FMRI analysis package

most recent commit 4 months ago

Brainiak ⭐ 315

Brain Imaging Analysis Kit

total releases 15most recent commit 5 months ago

Mriqc ⭐ 275

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

dependent packages 1total releases 104most recent commit a month ago

Intensity Normalization ⭐ 272

normalize the intensities of various MR image modalities

dependent packages 1total releases 16most recent commit a year ago

Applesiliconforneuroimaging ⭐ 246

Review the challenges and potential of ARM-based Apple Silicon macOS for brain imaging research

most recent commit 8 months ago

Bids Starter Kit ⭐ 245

Collection of tutorials, wikis, and templates to get you started with creating BIDS compliant datasets

most recent commit 4 months ago

Bids Specification ⭐ 235

Brain Imaging Data Structure (BIDS) Specification

dependent packages 1total releases 8most recent commit 3 months ago

The 10 Most Depended On Neuroimaging Open Source Projects

Nibabel ⭐ 598

Python package to access a cacophony of neuro-imaging file formats

dependent packages 556total releases 40latest release April 03, 2023most recent commit 4 months ago

Mne Python ⭐ 2,449

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

dependent packages 187total releases 76latest release November 20, 2023most recent commit 3 months ago

Fitz ⭐ 9

Modern Nipype Workflow Management based on Lyman

dependent packages 70total releases 2latest release February 25, 2017most recent commit 2 years ago

Niworkflows ⭐ 81

Common workflows for MRI (anatomical, functional, diffusion, etc)

dependent packages 12total releases 204latest release October 12, 2023most recent commit 3 months ago

Mne Bids ⭐ 110

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

dependent packages 10total releases 16latest release November 16, 2023most recent commit 3 months ago

Coinstac ⭐ 40

Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation

dependent packages 9total releases 104latest release September 25, 2023most recent commit 4 months ago

Brainspace ⭐ 125

BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

dependent packages 6total releases 7latest release January 04, 2022most recent commit a year ago

Fslr ⭐ 32

FSL-R Interface package

dependent packages 6total releases 13latest release August 05, 2019most recent commit 2 years ago

Sdcflows ⭐ 27

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

dependent packages 6total releases 58latest release November 10, 2023most recent commit 3 months ago

Nimare ⭐ 166

Coordinate- and image-based meta-analysis in Python

dependent packages 6total releases 34latest release November 02, 2023most recent commit 4 months ago

The 10 Latest Releases In Neuroimaging Open Source Projects

Smriprep ⭐ 111

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

dependent packages 4total releases 64latest release December 08, 2023most recent commit 5 months ago

Junifer ⭐ 12

Forschungszentrum Jülich Neuroimaging Feature Extractor

total releases 108latest release December 04, 2023most recent commit 4 months ago

Actflowtoolbox ⭐ 29

The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

total releases 7latest release November 28, 2023most recent commit 5 months ago

Openneuro ⭐ 91

A free and open platform for analyzing and sharing neuroimaging data

dependent packages 5total releases 174latest release November 27, 2023most recent commit 3 months ago

Nibabies ⭐ 19

Processing tools for magnetic resonance images of infant brains

total releases 25latest release November 22, 2023most recent commit 4 months ago

Fmriprep ⭐ 599

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

dependent packages 1total releases 178latest release November 22, 2023most recent commit 25 days ago

Tedana ⭐ 149

TE-dependent analysis of multi-echo fMRI

dependent packages 4total releases 21latest release November 21, 2023most recent commit 3 months ago

Mne Python ⭐ 2,449

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

dependent packages 187total releases 76latest release November 20, 2023most recent commit 3 months ago

Mne Bids ⭐ 110

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

dependent packages 10total releases 16latest release November 16, 2023most recent commit 3 months ago

Sdcflows ⭐ 27

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

dependent packages 6total releases 58latest release November 10, 2023most recent commit 3 months ago

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