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41 search results found

Awesome Genome Visualization ⭐ 663

A list of interesting genome browser or genome-browser-like implementations

Genome assembly evaluation tool

Pycircos ⭐ 277

Ideogram ⭐ 265

Chromosome visualization for the web

A genome browser that shows long reads and complex variants better

Genvisr ⭐ 188

Genome data visualizations

Methylkit ⭐ 176

R package for DNA methylation analysis

New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support

Mcscanx ⭐ 135

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

Sigminer ⭐ 119

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/

Genomic Interactive Visualization Engine ⭐ 108

Genomic Interactive Visualization Engine

Hic Data Analysis Bootcamp ⭐ 78

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

Pan Genome Analysis ⭐ 61

Processing pipeline for pan-genome visulization and exploration

Splitthreader ⭐ 60

Explore rearrangements and copy-number amplifications in a cancer genome

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

Genomegtftools ⭐ 52

convert various features into a GFF-like file for use in genome browsers

Visualization and annotation of CNVs from population-scale whole-genome sequencing data

Fluentdna ⭐ 43

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

GENome Organisation Visual Analytics

Awesome Biological Visualizations ⭐ 41

A list of web-based interactive biological data visualizations.

A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations

3d Genome Processing Tutorial ⭐ 28

A 3D genome data processing tutorial for ISMB/ECCB 2017

Comparative_genomics ⭐ 24

Micro 612 genomics workshop

Gssplayground ⭐ 21

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

Millefy: Genome browser-like visualization of single-cell RNA-seq dataset

Python-based UCSC genome browser snapshot-taker and gallery-maker

Python wrapper for Circos

Visual exploration of large genome interaction matrices with interactive small multiples.

D3 based visualisation for comparative genomics

Graph_summarization ⭐ 8

Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.

Pan Genome Visualization ⭐ 7

Schematize ⭐ 7

Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.

Tripal_jbrowse ⭐ 7

Drupal/Tripal: Drupal integration for GMOD JBrowse instances.

A mosaic genome painting tool for plant genomes

Plot allele frequencies in VCF files

Vg Relations ⭐ 6

Visual Genome Relationship Visualization

visual analysis of your VCF files

1000 Genomes Project population visualizations using dimensionality reduction

A tool for the visualization and analysis of longitudinal behavioral data

Pathospot Visualize ⭐ 5

Interactively visualize data from pathoSPOT-compare to find potential outbreaks

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