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Search results for transposable elements

transposable-elements x

19 search results found

Extensive de-novo TE Annotator

Earlgrey ⭐ 90

Earl Grey: A fully automated TE curation and annotation pipeline

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

Salmonte ⭐ 67

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Dnapipete ⭐ 38

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

Annotation helper tool for the manual curation of transposable element consensus sequences

Transposome ⭐ 30

A toolkit for annotation of transposable element families from unassembled sequence reads

A tool for discovering transposable elements and describing patterns of genome evolution

Te_density ⭐ 24

Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/article

Te_finder ⭐ 16

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

Transposon Insertion Finder - Detection of new TE insertions in NGS data

Starfish ⭐ 16

starfish: a modular toolkit for giant mobile element annotation

Tes_genes_relationship_pipeline ⭐ 15

Distribution of TEs and their relationship to genes in host genome

Chimerate ⭐ 12

A pipeline to detect chimeric transcripts derived from genes and transposable elements.

Digs Tool ⭐ 9

Database-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.

A tool to quantify transposable elements expression in scRNA-seq

Transposable Element Finder - Detection of active transposable elements from NGS data

High-precision TE Annotator

Nf Repeatmasking ⭐ 5

Nextflow workflow for automatic repeat detection, classification and masking

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